View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_high_9 (Length: 341)
Name: NF9910_high_9
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 335797 - 336099
Alignment:
| Q |
19 |
aattgctctaaactatacaagaaagaatcatatcttgatctcaaatagaaagtagaagggataggggtgtggtgtccatacagtgtaatggaatgggaag |
118 |
Q |
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| T |
335797 |
aattgctctaaactatacaagaaagaatcatatcttgatctcaaatagaaagagga---gataggggtgtggtgtccatacagtgtaatggaatgggaag |
335893 |
T |
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| Q |
119 |
tggacgtttaccaggtttacacagtgcatcgctgtctatatattatagcatgtgatgtcaatgccttcttgtgttttgttttgtggatttctctctcttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
335894 |
tggacgtttaccaggtttacacagtgcatcgctgtctatata-----gcatgtgatgtcaatgccttcttgtgtgttgttttgtggatttctctctcttt |
335988 |
T |
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| Q |
219 |
accttctatgcctataaccatttatttccaattccaacttgcattttttattttcacataaaaagaccaatgaagacaaaactattctaggatttgagtt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
335989 |
accttctatgcctataaccatttatttccaattccaacttgcaattttgattttcacataaaaagaccaatgaagacaaaactattctaggatttgagtt |
336088 |
T |
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| Q |
319 |
cgattcccctt |
329 |
Q |
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||||||||||| |
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| T |
336089 |
cgattcccctt |
336099 |
T |
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