View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_12 (Length: 389)
Name: NF9910_low_12
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 45140 - 45500
Alignment:
| Q |
19 |
aacattgtatgatgttcatgctgaacattgttataaaagtcctctgttttgaattttcctagaccttttaatgatcgtttttgataaaataacattacgg |
118 |
Q |
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| T |
45140 |
aacattgtatgatgttcgtgctgaacattgttataaaagtcctctgttttgaattttcctagatcttttaatgatcgtttttgataaaataacattacgg |
45239 |
T |
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| Q |
119 |
tgatgattcattatgtgttgctggtttgcaacttttattggattttagatttaacttttggccttaacccatataggctgggtcaagtaggttggtcttg |
218 |
Q |
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| T |
45240 |
tgatgattcattatgtgttgctggttttcaacttttattggattttagatttaacttctggccttaacccatatgggctgggtcaagtaggttggtcttg |
45339 |
T |
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| Q |
219 |
accatactggcgactctaaatgtataacgccaacactttgttgaggagtttaattcagtctcactattgcagcttctaaagcctaaatgcttattgaatt |
318 |
Q |
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| T |
45340 |
accatactggcgactctaaatgtataaagccaacactttgttgaggagtttaattcagtctcactattgcagcttctaaagcctaaatgcttattgaatt |
45439 |
T |
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| Q |
319 |
ccattttgatgtttgatttgaatttctgagaaatagcttgccaatttgaaacctccctttg |
379 |
Q |
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| T |
45440 |
ccattttgatgtttgatttgaatttctgagaaatagcctgccaatttgaaacctccctttg |
45500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 30 - 369
Target Start/End: Original strand, 21358594 - 21358933
Alignment:
| Q |
30 |
atgttcatgctgaacattgttataaaagtcctctgttttgaattttcctagaccttttaatgatcgtttttgataaaataacattacggtgatgattcat |
129 |
Q |
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| T |
21358594 |
atgttcatgctgaacattttggtaaagatcctctttttcaaattttcctagaccgtttgatgatggtttctgatgaaataaaactacggtgatgattcat |
21358693 |
T |
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| Q |
130 |
tatgtgttgctggtttgcaacttttat-tggattttagatttaacttttggccttaacccatataggctgggtcaagtaggttggtcttgaccatactgg |
228 |
Q |
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| T |
21358694 |
tacgtgttgctggtttgccatttttttattgtttttagatttaaatttttggcctaacccatatgggttggggcaagta-gttggacttcatcatattga |
21358792 |
T |
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| Q |
229 |
cgactctaaatgtataacgccaacactttgttgaggagtttaattcagtctcactattgcagcttctaaagcctaaatgcttattgaattccattttgat |
328 |
Q |
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| T |
21358793 |
tggctctaaatgtttaaagccaacactttgttaaggagtttcattgagtatcacagttgcagtttacaaagcctaaatgtctatcaaaatccatttttat |
21358892 |
T |
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| Q |
329 |
gtttgatttgaatttctgagaaatagcttgccaatttgaaa |
369 |
Q |
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| T |
21358893 |
gtttgatttgaatttttgagaaacagccagccaatttgaaa |
21358933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 18383024 - 18382950
Alignment:
| Q |
295 |
taaagcctaaatgcttattgaattccattttg-atgtttgatttgaatttctgagaaatagcttgccaatttgaa |
368 |
Q |
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||||||||||||| |||||||||| ||||||| | ||||| | |||||||||||| || ||| | |||||||||| |
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| T |
18383024 |
taaagcctaaatgtttattgaatttcattttgaaggtttggtatgaatttctgagcaagagcctaccaatttgaa |
18382950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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