View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_13 (Length: 389)
Name: NF9910_low_13
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 29538005 - 29537636
Alignment:
| Q |
1 |
aggacatctcagcatcaagcatcccagaccatcgttgattgaagtgccaatatatcctccccagcatgaagaacagtacggatgaccacaagaagcagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29538005 |
aggacatctcagcatcaagcatcccagaccatcgttgattgaagtgccaatatatcctccccagcatgaagaacagtacggatgaccacaagaagcagtg |
29537906 |
T |
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| Q |
101 |
tgaatcttagaaggacgataagcttcaaaacagatgccgcaagtaagcttaggcattttgttagcatcaggattcttataagctggcttctccaacaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29537905 |
tgaatcttagaaggacgataagcttcaaaacagatgccgcaagtaagcttaggcattttgttagcatcaggattcttataagctggcttctccaacaagc |
29537806 |
T |
|
| Q |
201 |
caacttttcttcggactccgtcttcatcagcaaaccaagcttcattaacattactgacattccaattataatgacgaagtaggatgcttgcagcaacagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29537805 |
caacttttcttcggactccgtcttcatcagcaaaccaagcttcattaacattactgacattccaattataatgacgaagtaggatgcttgcagcaacagg |
29537706 |
T |
|
| Q |
301 |
tggtatggaaagaactgctgcgacactcctgatatcatcttcctgccgttcccggatatctgattctttc |
370 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29537705 |
tggtatggaaagaactgctgcgacactcctgatatcatcttcctgccgttcccggatatctgattctttc |
29537636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 29553126 - 29552770
Alignment:
| Q |
1 |
aggacatctcagcatcaagcatcccagaccatcgttgattgaagtgccaatatatcctccccagcatgaagaacagtacggatgaccacaagaagcagtg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |
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| T |
29553126 |
aggacatctcagcatcaagcatcccggaccatcgttgattgaggtgccaatatatcctctccagcatgaaaaacagtacggatgaccgcaagaagcagtg |
29553027 |
T |
|
| Q |
101 |
tgaatcttagaaggacgataagcttcaaaacagatgccgcaagtaagcttaggcattttgttagcatcaggattcttataagctggcttctccaacaagc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | || | |||||||||||||| | |
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| T |
29553026 |
tgaatcttagaaagacgataagcttcaaaacagatgccgcaagtaagcttt---------ttagcatcatgattctcacaaaccggcttctccaacaaac |
29552936 |
T |
|
| Q |
201 |
caacttttcttcggactccgtcttcatcagcaaaccaagcttcattaacattactgacattccaattataatgacgaagtaggatgcttgcagcaacagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29552935 |
caacttttcttcggactccgtcttcatcagcaaaccaagcttcattaacattactgacattccaattataatgacgaagtaggatgcttgcagcaactgg |
29552836 |
T |
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| Q |
301 |
tggtatggaaagaactgctgcgacactcctgatatcatcttcctgccgttcccggatatctgattc |
366 |
Q |
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|||||||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||| |
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| T |
29552835 |
tggtatggaaagaactgccgcgacactactaatatcatcttcctgctgttcccggatatctgattc |
29552770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 262 - 370
Target Start/End: Complemental strand, 42188591 - 42188483
Alignment:
| Q |
262 |
ccaattataatgacgaagtaggatgcttgcagcaacaggtggtatggaaagaactgctgcgacactcctgatatcatcttcctgccgttcccggatatct |
361 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
42188591 |
ccaattgtaatgacgaagtaggatgcttgcagcaactggtggtatggaaagaactgttgcgacactactgatatcatcttcctgccgatcccggatatct |
42188492 |
T |
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| Q |
362 |
gattctttc |
370 |
Q |
| |
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||||||||| |
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| T |
42188491 |
gattctttc |
42188483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 42189053 - 42188960
Alignment:
| Q |
56 |
cctccccagcatgaagaacagtacggatgaccacaagaagcagtgtgaatcttagaaggacgataagcttcaaaacagatgccgcaagtaagct |
149 |
Q |
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||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42189053 |
cctccccagcatgaaaaacagtacggatggccgcaagaagcattgtgaatcttagaaggacgataagcttcaaaacagatgccgcaagtaagct |
42188960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 42188833 - 42188734
Alignment:
| Q |
164 |
gcatcaggattcttataagctggcttctccaacaagccaacttttcttcggactccgtcttcatcagcaaaccaagcttcattaacattactgacattcc |
263 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
42188833 |
gcatcaggattctcgtaaactggcttctccaacaagccaacttttcttcggactctgtcttcgtcagcaaaccaagcatcattaacattactgacattcc |
42188734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42189279 - 42189222
Alignment:
| Q |
1 |
aggacatctcagcatcaagcatcccagaccatcgttgattgaagtgccaatatatcct |
58 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
42189279 |
aggacatctcagcatcaagcatccaggaccatcgttaattgaagtgccaatatatcct |
42189222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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