View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_14 (Length: 383)
Name: NF9910_low_14
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 5 - 371
Target Start/End: Original strand, 29023899 - 29024253
Alignment:
| Q |
5 |
ccttgtacctctacccctatagtacttgacataacttcacttcttgattgaatctccactttcatttccttgcttgtaatttggtcattttccatgcttn |
104 |
Q |
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| T |
29023899 |
ccttgtacctctacccctatagtacttgacataacttcactccttgattgaatctccactttcatttccttgcttgtaatttgttcattttccatgctta |
29023998 |
T |
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| Q |
105 |
nnnnnnntggacactattttttggaaattgaagtttaatttgtagccaaatttataagtttaagaactaatgtaatgtaatgaaactatatataattgag |
204 |
Q |
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| T |
29023999 |
aaaaaaatggacactattttttggaaattgaagttta----gtagccaaatttataagtttaagaactaatgtaatg-----aaactatatataattgag |
29024089 |
T |
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| Q |
205 |
gaccttacctttagaaagtgtctagaagagccaatgggttaagaaagtagatatgcatgtaagatacaaacaatgtgaattaaaatctagatgaatatat |
304 |
Q |
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||||||||||| |||||||||||||||||| || | || | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29024090 |
gaccttaccttaagaaagtgtctagaagagaca---gaaaaaaagagtagatatgcatgtaagatacaaacaatgtgaattaaaatctagatcaatatat |
29024186 |
T |
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| Q |
305 |
aacacaaaagtttgctttatttctatgtcacggggtttgataatcaattcaattaattgccttacct |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29024187 |
aacacaaaagtttgctttatttctatgtcacggggtttgataatcaattcaattaattcccttacct |
29024253 |
T |
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