View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_15 (Length: 369)
Name: NF9910_low_15
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 15662321 - 15662673
Alignment:
| Q |
1 |
caatgagagtcgaaacaaccatacaagaattcgctgtttgcttcatccatgactctccttttttaagcaattcagcatgttctttggtaaatagttcgcg |
100 |
Q |
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| T |
15662321 |
caattagagtcgaaacaaccatacaagaattcgctgtttgcttcatccatgactctccttttttaagcaattcggcatgttctttggtaaatagttcgcg |
15662420 |
T |
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| Q |
101 |
aggtgtcattccttcagaatttttcatttcaatcatatgtggctgcatgttctttttcacctcctgccaaatcgatgacatatgtattattctgtatgta |
200 |
Q |
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| T |
15662421 |
aggtgtcattccttcagaatttttcatttcaatcatatgtggctgcatgttctttttcacctcctgccaaatcgatgacatatgtattattctgtatgta |
15662520 |
T |
|
| Q |
201 |
aacttattacttcatgaaatctatcatatgattcgtatttttatatgagatagaaaaacatatatgtatactatatatacctcaaaccatgataattcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15662521 |
aacttattacttcatgaaatctatcatatgatttgtatttttatatgagatagaaaaacatatatgtatactatatatacctcaaaccatgataattcaa |
15662620 |
T |
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| Q |
301 |
gcatcatttgtaaagctgctcccgagactatattgagacgatcaggcggtgct |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15662621 |
gcatcatttgtaaagctgctcccgagactatattgagacgatcaggcggtgct |
15662673 |
T |
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