View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9910_low_16 (Length: 359)

Name: NF9910_low_16
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9910_low_16
NF9910_low_16
[»] chr4 (8 HSPs)
chr4 (1-346)||(3570083-3570429)
chr4 (6-300)||(36188698-36188993)
chr4 (70-213)||(14545235-14545375)
chr4 (251-314)||(20248766-20248829)
chr4 (2-61)||(21479510-21479569)
chr4 (3-68)||(13841060-13841125)
chr4 (275-313)||(42674937-42674975)
chr4 (275-324)||(25241955-25242004)
[»] chr2 (8 HSPs)
chr2 (3-344)||(18670442-18670784)
chr2 (250-314)||(16203024-16203088)
chr2 (274-334)||(30255635-30255695)
chr2 (2-61)||(23290199-23290258)
chr2 (272-314)||(29870711-29870753)
chr2 (274-344)||(32598765-32598835)
chr2 (272-305)||(1222582-1222615)
chr2 (274-314)||(17926995-17927035)
[»] chr8 (5 HSPs)
chr8 (41-344)||(33067885-33068190)
chr8 (275-313)||(2959469-2959507)
chr8 (192-313)||(15045834-15045956)
chr8 (275-307)||(12230356-12230388)
chr8 (275-305)||(24732752-24732782)
[»] chr7 (6 HSPs)
chr7 (189-344)||(3371628-3371784)
chr7 (123-209)||(48162805-48162891)
chr7 (126-208)||(15165112-15165194)
chr7 (275-324)||(8606933-8606982)
chr7 (1-61)||(8606658-8606718)
chr7 (272-312)||(48162948-48162988)
[»] chr1 (6 HSPs)
chr1 (152-344)||(47521698-47521890)
chr1 (272-344)||(38029803-38029875)
chr1 (2-61)||(22560009-22560068)
chr1 (275-303)||(6333129-6333157)
chr1 (274-314)||(22816557-22816597)
chr1 (275-327)||(39415785-39415837)
[»] chr3 (3 HSPs)
chr3 (272-324)||(37166312-37166364)
chr3 (272-305)||(11583674-11583707)
chr3 (275-324)||(26376679-26376728)
[»] chr5 (4 HSPs)
chr5 (165-314)||(33023480-33023630)
chr5 (272-304)||(27017496-27017528)
chr5 (275-312)||(38707176-38707213)
chr5 (1-61)||(27017224-27017284)
[»] chr6 (3 HSPs)
chr6 (276-307)||(33666891-33666922)
chr6 (275-305)||(3490338-3490368)
chr6 (275-305)||(31933862-31933892)
[»] scaffold0217 (1 HSPs)
scaffold0217 (275-305)||(8296-8326)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 3570083 - 3570429
Alignment:
Q  1 cttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatcattttacacaatttgcttacacttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3570083 cttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatcattttacacaatttgcttacacttc 3570182  T
Q  101 aggtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttgggaggtatggaatgaaaggaactacaggcttttctctaataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3570183 aggtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttgggaggtatggaatgaaaggaactacaggcttttctctaataaa 3570282  T
Q  201 gctaaatctattactcatctagtggaaaaagtaaaatg-tgttccttaggttggccgaaagctaaccgtgtctgttttccttttggttaccatatgtggt 299  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3570283 gctaaatctattactcatctagtggaaaaagtaaaatgttgttccttaggttggccgaaagctaaccgtgtctgttttccttttggttaccatatgtggt 3570382  T
Q  300 ggcagcaatctcttgcttgtctgggtataagttgactgtcattttct 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3570383 ggcagcaatctcttgcttgtctgggtataagttgactgtcattttct 3570429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 300
Target Start/End: Complemental strand, 36188993 - 36188698
Alignment:
Q  6 ggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatcattttacacaatttgcttacacttcaggtg 105  Q
    |||||||||||||||||||| ||||||||| ||   ||| |||   ||||||||||  | |||||  |||||||||| |||||||||||  ||||| | |    
T  36188993 ggttctctttggcaacatgtcaaggcttggattgacgtgcattcaatggatccccatcatattttcaatcattttactcaatttgcttattcttcatgag 36188894  T
Q  106 attttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttgggaggtatggaatgaaaggaactacaggcttttctctaataaagctaa 205  Q
     ||||  ||   | |||||| |||||||| | | ||| || |  |||||||||| |  |||||||||||||||  ||| | |||||||||||||||||||    
T  36188893 gttttggactctgtcgttctcttttgcaactaatttgactttgtagtgtttgggtgtaatggaatgaaaggaatcacatgtttttctctaataaagctaa 36188794  T
Q  206 atctattactcatctagtggaaaaagt-aaaatgtgttccttaggttggccgaaagctaaccgtgtctgttttccttttggttaccatatgtggtg 300  Q
    ||||||||  ||  |||||||||| || ||||| | |||||| || |||  |||||||||   ||| ||||||||||||||||| |||||||||||    
T  36188793 atctattatgcaattagtggaaaaggtaaaaatttcttcctttggatggttgaaagctaaaaatgtttgttttccttttggttatcatatgtggtg 36188698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 213
Target Start/End: Original strand, 14545235 - 14545375
Alignment:
Q  70 tggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttgggaggtatggaa 169  Q
    ||||||||||||| || ||||||||| ||   ||||  |||||| | || || |||||||||||| |||  ||||| | || |||||||| | |||||||    
T  14545235 tggatcattttactcagtttgcttactct---ggtggctttaaatctcgtcgatcttttttgcaacttacatggctttgcactgtttgggtgttatggaa 14545331  T
Q  170 tgaaaggaactacaggcttttctctaataaagctaaatctatta 213  Q
    |||||||||  | || |||||||| ||||| |||||||||||||    
T  14545332 tgaaaggaataatagacttttctccaataaggctaaatctatta 14545375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 20248766 - 20248829
Alignment:
Q  251 tggccgaaagctaaccgtgtctgttttccttttggttaccatatgtggtggcagcaatctcttg 314  Q
    |||| |||||||||   ||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  20248766 tggctgaaagctaaaaatgtctattttccttttggttaccatatgtggtggcaacaacctcttg 20248829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 21479569 - 21479510
Alignment:
Q  2 ttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 61  Q
    ||||||||||||||||||||| |||||   |||| || ||||||||||||||||||||||    
T  21479569 ttttggttctctttggcaacacgtgaaaaattggcttggtgtgtattttgtggatcccca 21479510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 13841125 - 13841060
Alignment:
Q  3 tttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacatt 68  Q
    ||||||||||||||| ||||||| ||| ||||| ||  ||||||||||||||||||| | ||||||    
T  13841125 tttggttctctttggaaacatgtaaagacttggcttgctgtgtattttgtggatcccaaatacatt 13841060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 42674975 - 42674937
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagcaatctctt 313  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  42674975 tttccttttggttatcatatgtggtggcagcaacctctt 42674937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 25242004 - 25241955
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagcaatctcttgcttgtctggg 324  Q
    ||||||||||||||||||||| ||||||| ||||| |||| |||| ||||    
T  25242004 tttccttttggttaccatatgcggtggcaacaatcccttgtttgtttggg 25241955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 3 - 344
Target Start/End: Original strand, 18670442 - 18670784
Alignment:
Q  3 tttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatcattttacacaatttgcttacacttcag 102  Q
    ||||||||||||||||||||||| ||| ||||| || ||||||| ||  |||||| ||   ||| || ||||||||||||||| ||| ||||| | || |    
T  18670442 tttggttctctttggcaacatgtaaagccttggattggtgtgtacttcttggatctccgacacacttaggatcattttacacagttttcttactcgtcgg 18670541  T
Q  103 gtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttgggaggtatggaatgaaaggaactacaggcttttctctaataaagc 202  Q
    ||| |||||||||||| ||||||||||||||| |||  || || | || ||||  || | |||| |||||||| ||| | |  || |||||||||||||     
T  18670542 gtggttttaaaccgcgacgttcttttttgcaacttatctgactttgcactgttcaggtgctatgaaatgaaagcaaccataaactcttctctaataaagt 18670641  T
Q  203 taaatctattactcatctagtggaaaaagtaaaat-gtgttccttaggttggccgaaagctaaccgtgtctgttttccttttggttaccatatgtggtgg 301  Q
    |||||||||||  || |||||||||||||||| || ||||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||||||    
T  18670642 taaatctattatgcagctagtggaaaaagtaacatagtgttccttaggttggctgaaagctaacggtgtttgtttttcttttggttaccatatgtggtgg 18670741  T
Q  302 cagcaatctcttgcttgtctgggtataagttgactgtcatttt 344  Q
    |||||| | ||| ||||| |||||||| ||||| |||| ||||    
T  18670742 cagcaaccccttacttgtttgggtataggttgattgtcgtttt 18670784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 16203024 - 16203088
Alignment:
Q  250 ttggccgaaagctaaccgtgtctgttttccttttggttaccatatgtggtggcagcaatctcttg 314  Q
    ||||| |||||||||   ||| ||||||||||||||||| ||||||||||| |||||| ||||||    
T  16203024 ttggctgaaagctaaaaatgtatgttttccttttggttatcatatgtggtgacagcaacctcttg 16203088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 30255635 - 30255695
Alignment:
Q  274 ttttccttttggttaccatatgtggtggcagcaatctcttgcttgtctgggtataagttga 334  Q
    |||| ||||||||||||||||||||||||||||| | |||| |||| |||| ||| |||||    
T  30255635 tttttcttttggttaccatatgtggtggcagcaaccccttgtttgtttggggataggttga 30255695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 23290258 - 23290199
Alignment:
Q  2 ttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 61  Q
    |||||||||||||||||||||||| ||   |||| || ||||||||||||||||| ||||    
T  23290258 ttttggttctctttggcaacatgttaaaaattggcttggtgtgtattttgtggattccca 23290199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 29870753 - 29870711
Alignment:
Q  272 tgttttccttttggttaccatatgtggtggcagcaatctcttg 314  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||    
T  29870753 tgttttcgttttggttatcatatgtggtggcagcaacctcttg 29870711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 32598835 - 32598765
Alignment:
Q  274 ttttccttttggttaccatatgtggtggcagcaatctcttgcttgtctgggtataagttgactgtcatttt 344  Q
    ||||||||||||||| ||| |||||||||||||| | ||| ||||| |||| ||  |||||||||| ||||    
T  32598835 ttttccttttggttatcatttgtggtggcagcaaccccttacttgtttgggcatcggttgactgtcttttt 32598765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 1222615 - 1222582
Alignment:
Q  272 tgttttccttttggttaccatatgtggtggcagc 305  Q
    |||||| |||||||||||||||||||||||||||    
T  1222615 tgtttttcttttggttaccatatgtggtggcagc 1222582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 17927035 - 17926995
Alignment:
Q  274 ttttccttttggttaccatatgtggtggcagcaatctcttg 314  Q
    |||||||||| | ||||||||||||||||||||| ||||||    
T  17927035 ttttccttttaggtaccatatgtggtggcagcaacctcttg 17926995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 344
Target Start/End: Complemental strand, 33068190 - 33067885
Alignment:
Q  41 tgtgtattttgtggatccccagtacattttggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaa-tttaa 139  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||||||||  ||||||||| |||||||||| | |||||||||||| || |||      
T  33068190 tgtgtactttgtggatccccaacacattttggatcattttacacaatttgcttattcttcaggtggttttaaaccgtgacgttcttttttgtaacttttt 33068091  T
Q  140 ttggctattcagtgtttgggaggtatggaatgaaaggaactacaggcttttctctaataaagctaaatctattactcatctagtggaaaaag-taaaatg 238  Q
     || || | || |||||||| ||| ||||||||||| ||| | | ||| |||||||||||||||| ||| ||||  || | ||||||||||| |||| |     
T  33068090 ctgactttgcactgtttgggtggtttggaatgaaagtaaccagatgctcttctctaataaagctatatcgattatacaaccagtggaaaaagttaaactt 33067991  T
Q  239 tgttccttaggttggccgaaagctaaccgtgtctgttttccttttggttaccatatgtggtggcagcaatctcttgcttgtctgggtataagttgactgt 338  Q
    |||||||||||||||| |||||||||| |||| ||||||| ||||||||| |||||| | | ||| ||| | |||  |||| |||||||| ||| |||||    
T  33067990 tgttccttaggttggctgaaagctaacggtgtatgttttcgttttggttatcatatgcgttcgcaacaaccccttatttgtttgggtataggtttactgt 33067891  T
Q  339 catttt 344  Q
    | ||||    
T  33067890 cgtttt 33067885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 2959507 - 2959469
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagcaatctctt 313  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2959507 tttccttttggttaccatatgtggtggcagcaacctctt 2959469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 313
Target Start/End: Original strand, 15045834 - 15045956
Alignment:
Q  192 tctaataaagctaaatctattactcatctagtggaaaaagt-aaaatgtgttccttaggttggccgaaagctaaccgtgtctgttttccttttggttacc 290  Q
    ||||||||||||||||||||||  || ||  |||||| ||| |||||   ||| |||  ||||| ||||||||| | ||| |||||||||||| ||||||    
T  15045834 tctaataaagctaaatctattatgcagcttctggaaagagtcaaaattatttctttaaattggctgaaagctaaacatgtttgttttccttttagttacc 15045933  T
Q  291 atatgtggtggcagcaatctctt 313  Q
    || |||||||||| ||| |||||    
T  15045934 atttgtggtggcaacaacctctt 15045956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 12230388 - 12230356
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagcaa 307  Q
    |||||||||||||||||||||||||||||||||    
T  12230388 tttccttttggttaccatatgtggtggcagcaa 12230356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 24732782 - 24732752
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagc 305  Q
    |||||||||||||||||||||||||||||||    
T  24732782 tttccttttggttaccatatgtggtggcagc 24732752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 189 - 344
Target Start/End: Original strand, 3371628 - 3371784
Alignment:
Q  189 ttctctaataaagctaaatctattactcatctagtggaaaaagtaaaatgt-gttccttaggttggccgaaagctaaccgtgtctgttttccttttggtt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||| |||| |||||||||    
T  3371628 ttctctaataaagctaaatctattactcatctagtggaaaaagtaaaatattgttcattaggttggccgaaagctaacagtgtctatttttcttttggtt 3371727  T
Q  288 accatatgtggtggcagcaatctcttgcttgtctgggtataagttgactgtcatttt 344  Q
    |||||||||||||||| ||| ||||  ||| | || ||||| |||||||||| ||||    
T  3371728 accatatgtggtggcaacaacctctaacttatttgtgtataggttgactgtcgtttt 3371784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 48162805 - 48162891
Alignment:
Q  123 tcttttttgcaatttaattggctattcagtgtttgggaggtatggaatgaaaggaactacaggcttttctctaataaagctaaatct 209  Q
    |||||||||||| ||| |||||| | || |||||||  | ||||||||||||||||  |||| ||||||||  ||||||||||||||    
T  48162805 tcttttttgcaacttatttggctctgcactgtttggatgttatggaatgaaaggaataacagacttttctccgataaagctaaatct 48162891  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 15165112 - 15165194
Alignment:
Q  126 tttttgcaatttaattggctattcagtgtttgggaggtatggaatgaaaggaactacaggcttttctctaataaagctaaatc 208  Q
    ||||||||||| | |||||| |  ||||||| || | ||||||||||||| ||  | ||||||||||||||||| ||||||||    
T  15165112 tttttgcaattgatttggctttgtagtgttttggtgttatggaatgaaagaaatcataggcttttctctaataatgctaaatc 15165194  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 8606933 - 8606982
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagcaatctcttgcttgtctggg 324  Q
    ||||||||||||||||||||||||||| ||||| | |||| |||| ||||    
T  8606933 tttccttttggttaccatatgtggtgggagcaaccccttgtttgtttggg 8606982  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8606658 - 8606718
Alignment:
Q  1 cttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 61  Q
    |||||| ||||||||||||||||||||||   ||| || ||||||| | ||||||||||||    
T  8606658 cttttgattctctttggcaacatgtgaagaaatggattggtgtgtactatgtggatcccca 8606718  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 48162948 - 48162988
Alignment:
Q  272 tgttttccttttggttaccatatgtggtggcagcaatctct 312  Q
    |||||| |||||||||||||||||| |||||||||| ||||    
T  48162948 tgtttttcttttggttaccatatgtagtggcagcaacctct 48162988  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 344
Target Start/End: Original strand, 47521698 - 47521890
Alignment:
Q  152 tgtttgggaggtatggaatgaaaggaactacaggcttttctctaataaagctaaatctattactcatctagtggaaaaagtaaaa-tgtgttccttaggt 250  Q
    |||||||| ||| ||||||||||||||| |||  || ||||||||||||||| ||||  |||  || ||| |||||||||||||| | |||| | |||||    
T  47521698 tgtttgggtggtttggaatgaaaggaaccacaaactcttctctaataaagctgaatcggttatgcagctaatggaaaaagtaaaactttgtt-cataggt 47521796  T
Q  251 tggccgaaagctaaccgtgtctgttttccttttggttaccatatgtggtggcagcaatctcttgcttgtctgggtataagttgactgtcatttt 344  Q
    |||| || ||||||  ||||| ||||| ||||||||||  ||||||||||||| |||  ||||  |||| || ||||| |||||||||| ||||    
T  47521797 tggctgatagctaatagtgtcggtttttcttttggttattatatgtggtggcatcaacttcttaattgtttgtgtataggttgactgtcgtttt 47521890  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 38029803 - 38029875
Alignment:
Q  272 tgttttccttttggttaccatatgtggtggcagcaatctcttgcttgtctgggtataagttgactgtcatttt 344  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||| |||| ||  |||||||||| ||||    
T  38029803 tgttttccttttggttaccatttgtggtggcagcaacctcttgcatgtttgggcattggttgactgtcttttt 38029875  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 22560009 - 22560068
Alignment:
Q  2 ttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 61  Q
    |||| |||||||||||||||||||||||   ||| || ||||||||| ||||||||||||    
T  22560009 tttttgttctctttggcaacatgtgaagaaatggattggtgtgtattctgtggatcccca 22560068  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 6333129 - 6333157
Alignment:
Q  275 tttccttttggttaccatatgtggtggca 303  Q
    |||||||||||||||||||||||||||||    
T  6333129 tttccttttggttaccatatgtggtggca 6333157  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 22816597 - 22816557
Alignment:
Q  274 ttttccttttggttaccatatgtggtggcagcaatctcttg 314  Q
    ||||||||||||||| |||||||||||||| ||| ||||||    
T  22816597 ttttccttttggttatcatatgtggtggcatcaacctcttg 22816557  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 39415837 - 39415785
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagcaatctcttgcttgtctgggtat 327  Q
    ||||| |||||||||||||||||||||||| |||| |||  |||| |||||||    
T  39415837 tttccctttggttaccatatgtggtggcagtaatcccttatttgtttgggtat 39415785  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 37166312 - 37166364
Alignment:
Q  272 tgttttccttttggttaccatatgtggtggcagcaatctcttgcttgtctggg 324  Q
    |||||||||||||||||||||||||||||||||||| | |||| |||| ||||    
T  37166312 tgttttccttttggttaccatatgtggtggcagcaaccccttgtttgtttggg 37166364  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 11583707 - 11583674
Alignment:
Q  272 tgttttccttttggttaccatatgtggtggcagc 305  Q
    |||||||| |||||||||||||||||||||||||    
T  11583707 tgttttccatttggttaccatatgtggtggcagc 11583674  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 26376679 - 26376728
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagcaatctcttgcttgtctggg 324  Q
    ||||||||||||||||||||||||||||| ||| | |||| |||| ||||    
T  26376679 tttccttttggttaccatatgtggtggcaacaaccccttgtttgtttggg 26376728  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 314
Target Start/End: Original strand, 33023480 - 33023630
Alignment:
Q  165 tggaatgaaaggaactacaggcttttctctaataaagctaaatctattactcatctagtggaaaaagta-aaatgtgttccttaggttggccgaaagcta 263  Q
    ||||||||||||||  ||| | | ||||||||||||||||||||| |||  || ||| ||||||||||| || |   | | |||  ||||| ||||||||    
T  33023480 tggaatgaaaggaatcacatgttgttctctaataaagctaaatctgttatgcagctactggaaaaagtacaagttactactttacattggctgaaagcta 33023579  T
Q  264 accgtgtctgttttccttttggttaccatatgtggtggcagcaatctcttg 314  Q
    |   ||| ||||||||||||||||| ||||||||| |||| ||| ||||||    
T  33023580 aaaatgtgtgttttccttttggttatcatatgtggcggcatcaacctcttg 33023630  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 27017496 - 27017528
Alignment:
Q  272 tgttttccttttggttaccatatgtggtggcag 304  Q
    |||||||||||||||||||||||||||||||||    
T  27017496 tgttttccttttggttaccatatgtggtggcag 27017528  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 38707213 - 38707176
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagcaatctct 312  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  38707213 tttccttttggttatcatatgtggtggcatcaatctct 38707176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27017224 - 27017284
Alignment:
Q  1 cttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 61  Q
    ||||||| ||||||||||||  |||||||  |||| || ||||||||| ||||||||||||    
T  27017224 cttttggctctctttggcaatctgtgaagaattggattggtgtgtattctgtggatcccca 27017284  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Complemental strand, 33666922 - 33666891
Alignment:
Q  276 ttccttttggttaccatatgtggtggcagcaa 307  Q
    ||||||||||||||||||||||||||||||||    
T  33666922 ttccttttggttaccatatgtggtggcagcaa 33666891  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 3490338 - 3490368
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagc 305  Q
    |||||||||||||||||||||||||||||||    
T  3490338 tttccttttggttaccatatgtggtggcagc 3490368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 31933892 - 31933862
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagc 305  Q
    |||||||||||||||||||||||||||||||    
T  31933892 tttccttttggttaccatatgtggtggcagc 31933862  T

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Target: scaffold0217 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 8296 - 8326
Alignment:
Q  275 tttccttttggttaccatatgtggtggcagc 305  Q
    |||||||||||||||||||||||||||||||    
T  8296 tttccttttggttaccatatgtggtggcagc 8326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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