View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_19 (Length: 349)
Name: NF9910_low_19
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 119 - 270
Target Start/End: Complemental strand, 6445375 - 6445224
Alignment:
| Q |
119 |
ttttaaataagtaacccttctatatatatttgtattgaatgacagttgaatatgaatggaacaattttctgtcacacaaccaaccgtttattgaaataca |
218 |
Q |
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| T |
6445375 |
ttttaaataagtaacccttctatatatatttgtattgaatgacagttgaatatgaatggaacaattttctgccacacaaccaaccgtttattgaaataca |
6445276 |
T |
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| Q |
219 |
accatacataaaaggagaaaataggaaatgcacgccagtgttagctaatttt |
270 |
Q |
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| T |
6445275 |
accatacataaaaggagaaaataggaaatgcacaccagtgttagctaatttt |
6445224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 6445176 - 6445111
Alignment:
| Q |
266 |
attttccttgtaatcaatacagttttaatcattaaaaagaaattaatggtgtgaatgtgcactaga |
331 |
Q |
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| T |
6445176 |
attttccttgtaatcaatacagttttaatcattaaaaagaaattaatggattgaatgtgcactaga |
6445111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 6445456 - 6445369
Alignment:
| Q |
1 |
ccatgattgaatgcatatcatctctcaaatctatatcacannnnnnnattcagggtaaataattccatttcctcattaatctttttaaa |
89 |
Q |
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| T |
6445456 |
ccatgattgaatgcatatcatctctcaaatctatatcacattttttt-ttcagggtaattaattcaatttcctcattaatctttttaaa |
6445369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 16074561 - 16074620
Alignment:
| Q |
272 |
cttgtaatcaatacagttttaatcattaaaaagaaattaatggtgtgaatgtgcactaga |
331 |
Q |
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| T |
16074561 |
cttgtaatcagtgcagttctaatcattaaaaagaaatgaatggtgtggatgtgcactaga |
16074620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 8969359 - 8969423
Alignment:
| Q |
267 |
ttttccttgtaatcaatacagttttaatcattaaaaagaaattaatggtgtgaatgtgcactaga |
331 |
Q |
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| T |
8969359 |
ttttccttgtaataagtacaattctaatcattaaaaagaaatgaagggtgtggatgtgcactaga |
8969423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 27118168 - 27118103
Alignment:
| Q |
267 |
ttttccttgtaatcaatacagttttaatcattaaaaagaaattaatggtgtgaatgtgcactagat |
332 |
Q |
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| T |
27118168 |
ttttctttgtaataagttcagttctaatcgttaaaaagaaatgaatggtgtggatgtgcactagat |
27118103 |
T |
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