View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9910_low_2 (Length: 628)

Name: NF9910_low_2
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9910_low_2
NF9910_low_2
[»] chr6 (28 HSPs)
chr6 (399-611)||(26964088-26964298)
chr6 (246-378)||(31290833-31290965)
chr6 (399-541)||(26650847-26650989)
chr6 (399-541)||(26756815-26756957)
chr6 (177-321)||(26629201-26629346)
chr6 (177-321)||(26735177-26735322)
chr6 (470-611)||(26965931-26966072)
chr6 (1-59)||(27525619-27525677)
chr6 (471-611)||(27422695-27422831)
chr6 (250-356)||(26963980-26964086)
chr6 (464-611)||(26629415-26629564)
chr6 (250-356)||(26650739-26650845)
chr6 (464-611)||(26735391-26735540)
chr6 (250-356)||(26756707-26756813)
chr6 (310-379)||(27652757-27652826)
chr6 (357-413)||(27422832-27422888)
chr6 (464-511)||(27652664-27652711)
chr6 (464-517)||(26640358-26640411)
chr6 (464-517)||(26746324-26746377)
chr6 (320-379)||(26640274-26640331)
chr6 (320-379)||(26746240-26746297)
chr6 (391-430)||(26629362-26629401)
chr6 (391-430)||(26735338-26735377)
chr6 (337-379)||(27506761-27506803)
chr6 (258-302)||(26964723-26964767)
chr6 (421-504)||(28783611-28783694)
chr6 (384-481)||(27606872-27606969)
chr6 (177-237)||(27422971-27423031)
[»] chr1 (2 HSPs)
chr1 (1-65)||(14648652-14648716)
chr1 (1-65)||(14658442-14658506)
[»] scaffold0713 (1 HSPs)
scaffold0713 (1-60)||(3487-3546)
[»] chr5 (1 HSPs)
chr5 (1-61)||(27199843-27199903)
[»] scaffold0003 (3 HSPs)
scaffold0003 (471-611)||(64532-64668)
scaffold0003 (357-413)||(64475-64531)
scaffold0003 (177-237)||(64332-64392)
[»] chr4 (3 HSPs)
chr4 (329-380)||(18719305-18719354)
chr4 (329-379)||(18674703-18674751)
chr4 (329-376)||(18692787-18692832)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 399 - 611
Target Start/End: Original strand, 26964088 - 26964298
Alignment:
Q  399 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcc 498  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||||  ||||| |  |||||||||||||||||||| |||||||||| ||||    
T  26964088 tttatctgctactccttatattttttcttccatttctttgtgaagtcttacaatctggtaatccgtttctctttaatgtatctcgtgaattaacacttcc 26964187  T
Q  499 tttattcatatgacttataaatctcttaagatgaatttaatttaactttctc-gttttaaccgtaacatattagaattttttggtttctgcataatggtt 597  Q
    |||||||||||||||||||||||| |||| |||||||| |||| |  |||||  |||| |||| ||||| |||||||||||| |||| |||||| |||||    
T  26964188 tttattcatatgacttataaatcttttaaaatgaatttcatttta--ttctcatttttgaccgaaacatgttagaatttttt-gtttttgcatagtggtt 26964284  T
Q  598 tgtatgactatttc 611  Q
    |||| ||| |||||    
T  26964285 tgtacgacaatttc 26964298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 246 - 378
Target Start/End: Original strand, 31290833 - 31290965
Alignment:
Q  246 tgttgtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgt 345  Q
    |||||||| || |||||||||||||||||  ||||||||||||| | ||| |||||| ||||| ||||| |||||||||||  |||||||||||||||||    
T  31290833 tgttgtgggaacatttatatgtatgaactagatggtataaagaagcttttttcctatcaaattttgttttgatttggcaaatggaagtggagaatttcgt 31290932  T
Q  346 ttcataactcaaagttttggttttgtacttcca 378  Q
    |||||||||||||||||||||||||||||||||    
T  31290933 ttcataactcaaagttttggttttgtacttcca 31290965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 399 - 541
Target Start/End: Original strand, 26650847 - 26650989
Alignment:
Q  399 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcc 498  Q
    ||||||| ||||||| ||||||||||||||| | || || |||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||    
T  26650847 tttatcttctactccttatattttttcttccttatctttgtgaagtcttacaaactggtactccgtttctctttaatgtatctcgtgaattaacatttcc 26650946  T
Q  499 tttattcatatgacttataaatctcttaagatgaatttaattt 541  Q
    ||||||||||||||||| |||| | |||| |||||||| ||||    
T  26650947 tttattcatatgacttaaaaatattttaaaatgaatttcattt 26650989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 399 - 541
Target Start/End: Original strand, 26756815 - 26756957
Alignment:
Q  399 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcc 498  Q
    ||||||| ||||||| ||||||||||||||| | || || |||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||    
T  26756815 tttatcttctactccttatattttttcttccttatctttgtgaagtcttacaaactggtactccgtttctctttaatgtatctcgtgaattaacatttcc 26756914  T
Q  499 tttattcatatgacttataaatctcttaagatgaatttaattt 541  Q
    ||||||||||||||||| |||| | |||| |||||||| ||||    
T  26756915 tttattcatatgacttaaaaatattttaaaatgaatttcattt 26756957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 26629201 - 26629346
Alignment:
Q  177 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaacttt 276  Q
    ||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||     
T  26629201 atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaacttg 26629300  T
Q  277 atggtataaagaa-acctttctcctattaaattatgtttcgatttg 321  Q
    |||||||||||||  ||||| |||||| ||||| | ||| ||||||    
T  26629301 atggtataaagaaggcctttttcctatcaaattttcttttgatttg 26629346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 26735177 - 26735322
Alignment:
Q  177 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaacttt 276  Q
    ||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||     
T  26735177 atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaacttg 26735276  T
Q  277 atggtataaagaa-acctttctcctattaaattatgtttcgatttg 321  Q
    |||||||||||||  ||||| |||||| ||||| | ||| ||||||    
T  26735277 atggtataaagaaggcctttttcctatcaaattttcttttgatttg 26735322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 470 - 611
Target Start/End: Original strand, 26965931 - 26966072
Alignment:
Q  470 tttaatgtatctcatgaattaacatttcctttattcatatgacttataaatctcttaagatgaatttaatttaactttctcgttttaaccgtaacatatt 569  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||| ||   |||| |||| |||  ||| | |||||| |||| | |||||||| ||    
T  26965931 tttaatgtatctcatgaattaatatttcctttatacatatgacttatacatgctttaaaatgattttggttttattttctcattttgagcgtaacatgtt 26966030  T
Q  570 agaattttttggtttctgcataatggtttgtatgactatttc 611  Q
    |  |||||||| |||||||||||| ||||||||||| |||||    
T  26966031 atgattttttgttttctgcataatcgtttgtatgacaatttc 26966072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27525677 - 27525619
Alignment:
Q  1 ggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattatt 59  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27525677 ggaaaaatctagtagcttccatgttttgtgtacatctatttcatttaattactattatt 27525619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 611
Target Start/End: Complemental strand, 27422831 - 27422695
Alignment:
Q  471 ttaatgtatctcatgaattaacatttcctttattcatatgacttataaatctcttaagatgaatttaatttaactttctcgttttaaccgtaacatatta 570  Q
    ||||||||||||| ||||| | ||||||||    ||||||| |||| ||| | ||||  ||||||| |||| | |||||| |||| |||||||||| | |    
T  27422831 ttaatgtatctcaagaattcatatttcctt----catatgatttattaatattttaaactgaatttcattttattttctcattttgaccgtaacatgtca 27422736  T
Q  571 gaattttttggtttctgcataatggtttgtatgactatttc 611  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  27422735 gaattttttgttttctgcataatggtttgtatgacaatttc 27422695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 26963980 - 26964086
Alignment:
Q  250 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 349  Q
    |||||||  ||||||||||||||||| |||||||| | || ||||| |||||| ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26963980 gtggaaacgtttatatgtatgaacttgatggtatacaaaagcctttttcctatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26964079  T
Q  350 taactca 356  Q
    |||||||    
T  26964080 taactca 26964086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 464 - 611
Target Start/End: Original strand, 26629415 - 26629564
Alignment:
Q  464 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttataaatctcttaagatgaatttaa--tttaactttctcgttttaaccgt 561  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||  ||||| || ||||||  |||| |||||||| |  |||   |||||| |||| |||||    
T  26629415 tttctatttaaagtatctcatgaaataatatttcctttattgttatgagttgtaaatcatttaaaatgaatttcatttttgtttttctcattttgaccgt 26629514  T
Q  562 aacatattagaattttttggtttctgcataatggtttgtatgactatttc 611  Q
    |||||  |||||||||||| ||||| ||||||||||| |||||| |||||    
T  26629515 aacattgtagaattttttgttttctacataatggtttatatgacaatttc 26629564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 26650739 - 26650845
Alignment:
Q  250 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 349  Q
    |||||||  |||||||||||||| || |||||||| |||| ||||| ||| || ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26650739 gtggaaacgtttatatgtatgaaattgatggtatacagaagcctttttccaatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26650838  T
Q  350 taactca 356  Q
    |||||||    
T  26650839 taactca 26650845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 464 - 611
Target Start/End: Original strand, 26735391 - 26735540
Alignment:
Q  464 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttataaatctcttaagatgaatttaa--tttaactttctcgttttaaccgt 561  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||  ||||| || ||||||  |||| |||||||| |  |||   |||||| |||| |||||    
T  26735391 tttctatttaaagtatctcatgaaataatatttcctttattgttatgagttgtaaatcatttaaaatgaatttcatttttgtttttctcattttgaccgt 26735490  T
Q  562 aacatattagaattttttggtttctgcataatggtttgtatgactatttc 611  Q
    |||||  |||||||||||| ||||| ||||||||||| |||||| |||||    
T  26735491 aacattgtagaattttttgttttctacataatggtttatatgacaatttc 26735540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 26756707 - 26756813
Alignment:
Q  250 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 349  Q
    |||||||  |||||||||||||| || |||||||| |||| ||||| ||| || ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26756707 gtggaaacgtttatatgtatgaaattgatggtatacagaagcctttttccaatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26756806  T
Q  350 taactca 356  Q
    |||||||    
T  26756807 taactca 26756813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 27652826 - 27652757
Alignment:
Q  310 tgtttcgatttggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 379  Q
    ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  27652826 tgttttgatctggcaaatggaagtggagaatttcgtttcataactcaaaattttggttttatgcttccaa 27652757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 27422888 - 27422832
Alignment:
Q  357 aagttttggttttgtacttccaatagaaaaaattaatttacttttatctgctactcc 413  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  27422888 aagttttggttttgtacttacaataggaaaaattaatttacttcgatctgctactcc 27422832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 511
Target Start/End: Complemental strand, 27652711 - 27652664
Alignment:
Q  464 tttctctttaatgtatctcatgaattaacatttcctttattcatatga 511  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||    
T  27652711 tttctctttaatgtatctcatgaattaatatttactttattcatatga 27652664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 517
Target Start/End: Original strand, 26640358 - 26640411
Alignment:
Q  464 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttata 517  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||| ||||    
T  26640358 tttctctttattgtatctcatgaattaacatttccttcattcgtatgacatata 26640411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 517
Target Start/End: Original strand, 26746324 - 26746377
Alignment:
Q  464 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttata 517  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||| ||||    
T  26746324 tttctctttattgtatctcatgaattaacatttccttcattcgtatgacatata 26746377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 26640274 - 26640331
Alignment:
Q  320 tggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 379  Q
    |||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  26640274 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtacttccaa 26640331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 26746240 - 26746297
Alignment:
Q  320 tggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 379  Q
    |||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  26746240 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtacttccaa 26746297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 26629362 - 26629401
Alignment:
Q  391 aatttacttttatctgctactccatatattttttcttcca 430  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26629362 aatttccttttatctgctactccatatattttttcttcca 26629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 26735338 - 26735377
Alignment:
Q  391 aatttacttttatctgctactccatatattttttcttcca 430  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26735338 aatttccttttatctgctactccatatattttttcttcca 26735377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 27506803 - 27506761
Alignment:
Q  337 gaatttcgtttcataactcaaagttttggttttgtacttccaa 379  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  27506803 gaatatcgtttcatagctcaaagttttggttttgtacttccaa 27506761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 26964723 - 26964767
Alignment:
Q  258 atttatatgtatgaactttatggtataaagaaacctttctcctat 302  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||    
T  26964723 atttatatgtatgaacttgatggtataaagaagcctttttcctat 26964767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 504
Target Start/End: Original strand, 28783611 - 28783694
Alignment:
Q  421 ttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcctttatt 504  Q
    |||||||||||||| ||| ||| ||| |||||| ||| |    ||||||||||||||||||||||  |||| ||||||||||||    
T  28783611 ttttcttccatttcttttggaattctgacaaatcggttcaacatttctctttaatgtatctcatggtttaatatttcctttatt 28783694  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 481
Target Start/End: Complemental strand, 27606969 - 27606872
Alignment:
Q  384 aaaaattaatttacttttatctgctactccatatattttttcttccatttcattttgaagt-cttacaaattggtactttgtttctctttaatgtatct 481  Q
    |||||||||| ||||||||||| |||||   ||| |||||||||| |||| ||||| |||| ||||||||||||| |    ||||||||||||||||||    
T  27606969 aaaaattaatatacttttatctcctacttgttatcttttttcttctattt-atttttaagttcttacaaattggttcgacatttctctttaatgtatct 27606872  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 27423031 - 27422971
Alignment:
Q  177 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa 237  Q
    |||||||||||||||| ||||||||| ||||||||| || |  | |||| |||||||||||    
T  27423031 atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa 27422971  T

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Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14648716 - 14648652
Alignment:
Q  1 ggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattttaatt 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14648716 ggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattttaatt 14648652  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14658506 - 14658442
Alignment:
Q  1 ggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattttaatt 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14658506 ggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattttaatt 14658442  T

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Target: scaffold0713 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3546 - 3487
Alignment:
Q  1 ggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattattt 60  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3546 ggaaaaatctagtagcttccatgttttgtctacatctaattcatttaattactattattt 3487  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27199843 - 27199903
Alignment:
Q  1 ggaaaaatctagtagcttccatgttttgtctacatctatttcatttaattactattatttt 61  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  27199843 ggaaaaatctagtagcttccgtgttttgtctacatctatttcatttaattactattttttt 27199903  T

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Target: scaffold0003 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 611
Target Start/End: Original strand, 64532 - 64668
Alignment:
Q  471 ttaatgtatctcatgaattaacatttcctttattcatatgacttataaatctcttaagatgaatttaatttaactttctcgttttaaccgtaacatatta 570  Q
    ||||||||||||| ||||| | ||||||||    ||||||| |||| ||| | ||||  ||||||| |||| | |||||| |||| |||||||||| | |    
T  64532 ttaatgtatctcaagaattcatatttcctt----catatgatttattaatattttaaactgaatttcattttattttctcattttgaccgtaacatgtca 64627  T
Q  571 gaattttttggtttctgcataatggtttgtatgactatttc 611  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  64628 gaattttttgttttctgcataatggtttgtatgacaatttc 64668  T

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Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 64475 - 64531
Alignment:
Q  357 aagttttggttttgtacttccaatagaaaaaattaatttacttttatctgctactcc 413  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  64475 aagttttggttttgtacttacaataggaaaaattaatttacttcgatctgctactcc 64531  T

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Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 64332 - 64392
Alignment:
Q  177 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa 237  Q
    |||||||||||||||| ||||||||| ||||||||| || |  | |||| |||||||||||    
T  64332 atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa 64392  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 18719354 - 18719305
Alignment:
Q  329 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaat 380  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  18719354 gaagtggagaatttcgtttcataagtc--agttttggttttgtacttccaat 18719305  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 18674751 - 18674703
Alignment:
Q  329 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 379  Q
    ||||||||||||||| |||||||| |||  |||||||||||||||||||||    
T  18674751 gaagtggagaatttcatttcataaatca--gttttggttttgtacttccaa 18674703  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 18692832 - 18692787
Alignment:
Q  329 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttc 376  Q
    ||||||||||||||| |||||||| ||  |||||||||||||||||||    
T  18692832 gaagtggagaatttcatttcataaatc--agttttggttttgtacttc 18692787  T

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