View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_21 (Length: 338)
Name: NF9910_low_21
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_21 |
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| [»] scaffold0107 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 2971551 - 2971248
Alignment:
| Q |
18 |
aagtttgttgtagattcagatcaaaatactcacaacaattcattgatatgtggagcaaaattagcagcaaccaaaacactcacaacaattctttaaagac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2971551 |
aagtttgttgtagattcagatcaaaatactcacaacaattcattgatatgtggagcaaaattagcagcaaccaaaacactcacaacaattctttaaagac |
2971452 |
T |
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| Q |
118 |
tgcatcttcttcaacgcatgacttctcaattatcagagcctttagagtcaacatccacccccctagagccccttctatcaaagaagtcatttggcgtcct |
217 |
Q |
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| T |
2971451 |
tacatcttcttcaacgcatgacttctcaattatcagagcctttagagtcaacatccac-cccctagagccccttctattaaagaagtcatttggcatcct |
2971353 |
T |
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| Q |
218 |
ccaatccctggatgggtgaaacgtaacaccgatgatgcttgccttgggaatcctaaattttttgctcgtggggtcatttttagagacaataatgtagact |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
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| T |
2971352 |
ccaatccttggatgggtgaaacgtaacaccgatgatgcttgccttgggaatcctaaaattttagctcgtggggtcatttgtagagacaataatgtagact |
2971253 |
T |
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| Q |
318 |
gtctg |
322 |
Q |
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||||| |
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| T |
2971252 |
gtctg |
2971248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 9447403 - 9447451
Alignment:
| Q |
45 |
actcacaacaattcattgatatgtggagcaaaattagcagcaaccaaaa |
93 |
Q |
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| T |
9447403 |
actcacatcaatacattgatatctggaacaaaattagcagcaaccaaaa |
9447451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 14653745 - 14653793
Alignment:
| Q |
40 |
aaaatactcacaacaattcattgatatgtggagcaaaattagcagcaac |
88 |
Q |
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|||| ||||||| |||| | |||||||||||||||||||||||| |||| |
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| T |
14653745 |
aaaaaactcacaccaatactttgatatgtggagcaaaattagcaacaac |
14653793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 21242 - 21284
Alignment:
| Q |
165 |
tcaacatccacccccctagagccccttctatcaaagaagtcat |
207 |
Q |
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| T |
21242 |
tcaacatccacccccctagagccccattgatcaaagaagtcat |
21284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 11816430 - 11816388
Alignment:
| Q |
165 |
tcaacatccacccccctagagccccttctatcaaagaagtcat |
207 |
Q |
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| T |
11816430 |
tcaacatccacccccctagagccccattgatcaaagaagtcat |
11816388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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