View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9910_low_26 (Length: 312)
Name: NF9910_low_26
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 46734465 - 46734151
Alignment:
| Q |
1 |
acaactcgacgctagtaaaaatatattaattgaatgtaatcatgtgtgtccgtgttggtaacagacactctagacaccgagcatgccttctgtgctacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46734465 |
acaactcgacgctagtaaaaatatattaattgaatgtaatcatgtgtgtctgtgttggtaacagacactctagacaccgagcatgctttctgtgctacaa |
46734366 |
T |
|
| Q |
101 |
agatt---------------------taaaaaagcaaaatttgaagagttaagaaagaaacataccccaaagacagaatacgtagaaacaccatcacaaa |
179 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46734365 |
agattacaacccatgaaattagaatttaaaaaagcaaaatttgaagagttaagaaagaaacataccccaaagacagaatacgtagaaacaccatcacaaa |
46734266 |
T |
|
| Q |
180 |
cgactctttgacattcggtctttagtaaaatgaaatcttctcctttcttattctcgctagcatttccatacactacaaccatatcaggtttctctatttt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46734265 |
cgactctttgacattcggtctttagtaaaatgaaatcttctcctttcttattctcgctagcatttccatacactacaaccatatcaggtttctctatttt |
46734166 |
T |
|
| Q |
280 |
ctcgctcagcgattc |
294 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
46734165 |
ctcgctcagcgattc |
46734151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University