View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9910_low_27 (Length: 312)
Name: NF9910_low_27
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 44973904 - 44974189
Alignment:
| Q |
17 |
acaaacaaacaactccatcattgcaccatttctcttcttcaaacattgtacaccaannnnnnnaaactacatcctcaaagatgtttccctcacagcatac |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44973904 |
acaaacaaacaacaccatcattgcaccatttctcttcttcaaacattgtacaccaacccccccaaactacatcctcaaagatgtttccctcacagcatac |
44974003 |
T |
|
| Q |
117 |
ccttctgagattcttgccattgttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacacttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44974004 |
ccttctgagattcttgccattgttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacacttt |
44974103 |
T |
|
| Q |
217 |
cccttaactcttcacctatcactaacccttccacattcagaaaactctctgcttatgttcctcaacatgatgcatgtcttcctatg |
302 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44974104 |
ctcttaactcttcacctatcactaacccttctacattcagaaaactctctgcttatgttcctcaacatgatgcatgtcttcctatg |
44974189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University