View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_28 (Length: 305)
Name: NF9910_low_28
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 37 - 304
Target Start/End: Original strand, 37280259 - 37280526
Alignment:
| Q |
37 |
atgtcgtttaatt-aagtaaatgcatttcatttggtttggatcttaaataattgaatcgaatgctgaaatttagatctaaccagtccattccctctttag |
135 |
Q |
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| T |
37280259 |
atgtcgtttaatttaagtaaatgcatttcatttggcttggatcttaaataattgaatcgaatgctgaaatttagatctaaccagtctattccctctttag |
37280358 |
T |
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| Q |
136 |
acaacaacaggaaaacccaaattttttattttgagcaaatttctggactataactaaccataagcatttctagcnnnnnnnctaactataaccatatatt |
235 |
Q |
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| T |
37280359 |
acaacaacaagaaaacccaaattttttattttgagcaaatttct-gactataactaaccataagcatttctagcaaaaaaactaactataaccatatatt |
37280457 |
T |
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| Q |
236 |
gttgatgtatacttccataaatagttgaaatgtgaggtgtaagagtgtttgatacctatgcttctcctc |
304 |
Q |
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| T |
37280458 |
gttgatgtatacttccataaatagttaaaatgtgaggtgtaagagtgtttgataccaatgattttcctc |
37280526 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 37276562 - 37276635
Alignment:
| Q |
131 |
tttagacaacaacaggaaaacccaaattttttattttgagcaaatttctggactataactaaccataagcatttcta |
207 |
Q |
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| T |
37276562 |
tttagataataacatgaagacccaaatttt--attttgagcaaatttct-cactataactaaccataactatttcta |
37276635 |
T |
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