View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9910_low_3 (Length: 613)
Name: NF9910_low_3
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 31652039 - 31652466
Alignment:
| Q |
1 |
ctctcttctaaacccttgtttgaaagctcttttcctatatcttgatataaagtacctccacatgccacatttaggagttgtgaccctctacaaattccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652039 |
ctctcttctaaacccttgtttgaaagctcttttcctatatcttgatataaagtacctccacatgccacatttaggagttgtgaccctctacaaattccca |
31652138 |
T |
|
| Q |
101 |
agtaagggatatttctttcaagacaaagtttggctagtgctaattcaattgaatctttttctttgtcaattgatgtgtcactcacatgtagtcttcttat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652139 |
agtaaggaatatttctttcaagacaaagtttggctagtgctaattcaattgaatctttttctttgtcaattgatgtgtcactcacatgtagtcttcttat |
31652238 |
T |
|
| Q |
201 |
ttcttctaattcctcttgagaaagacatgatgtgtcttcctcgtaccatgatggatcaatgtcttctccttcacatagaagcacaccatggattggttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652239 |
ttcttctaattcctcttgagaaagacatgatgtgtcttcctcgtaccatgatggatcaatgtcttctccttcacatagaagcacaccatggattggttca |
31652338 |
T |
|
| Q |
301 |
aagctatctaacagcatgtggaccccggaaacgcgtggaactatgacgggtaccgcgccataaccgactataagatcaaggtgatattcacctaaaaaca |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652339 |
aagctatctaacaacatgtggaccccggaaacacgtggaactatgacgggtaccgcgccataaccgactataagatcaaggtgatattcacctaaaaaca |
31652438 |
T |
|
| Q |
401 |
ataatcatgtaatagttaataacaagat |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
31652439 |
ataatcatgtaatagttaataacaagat |
31652466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 434 - 602
Target Start/End: Original strand, 31652509 - 31652677
Alignment:
| Q |
434 |
aaaattcatattgaatgattgataaaagatggtaaacaaatacatgagaaatgaaacttaccaacaaaatcaacgaacttgttcttgcgaagggttcgtc |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652509 |
aaaattcatattgaatgattgataaaagatggtaaacaaatacatgagaaatgaaacttaccaacaaaatcaacgaacttgttcttgcgaagggttcgtc |
31652608 |
T |
|
| Q |
534 |
tagaaactattagaacacgagggagaatgccagataggtcagaagacattgtacgtgattgaatttgat |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652609 |
tagaaactattagaacacgagggagaatgccagataggtcagaagacattgtacgtgattgaatttgat |
31652677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 52 - 398
Target Start/End: Complemental strand, 219128 - 218776
Alignment:
| Q |
52 |
gtacctccacatgccacatttaggagttgtgaccctctacaaattcccaagtaagggatatttctttcaagacaaagtttggctagtgctaattcaattg |
151 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||| |||||||||||||| |||||||| || ||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
219128 |
gtacctccacatgcaacattaaggacttgtgaacctctacaaattcctaagtaaggaatgtttctttcaagacaaagctttgctaagattaattcaattg |
219029 |
T |
|
| Q |
152 |
aatctttttctttgtcaattgatgtgtcactcacatgtagtcttcttatttcttctaattcctcttgagaaaga---catgatgtgt---cttcctcgta |
245 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| || || | ||||||||||| || || || |||||| |||| ||||| ||| ||||| |
|
|
| T |
219028 |
aatctttttctttgtcaatgtttgtgtcacttgaatgaagctttttgatttcttctaactcttcatgtgaaagattacatgttgtgttatcttgttcgta |
218929 |
T |
|
| Q |
246 |
ccatgatggatcaatgtcttctccttcacatagaagcacaccatggattggttcaaagctatctaacagcatgtggaccccggaaacgcgtggaactatg |
345 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| | ||||| |||||| | || ||||| ||||| || || |
|
|
| T |
218928 |
ccatgaaggatctatgtcttctccttcacatagaagaacaccatgaattggttcaaagctctttaacaacatgtgtatacctgaaacacgtggtacaatc |
218829 |
T |
|
| Q |
346 |
acgggtaccgcgccataaccgactataagatcaaggtgatattcacctaaaaa |
398 |
Q |
| |
|
|| |||||||| |||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
218828 |
acaggtaccgcaccatttgctactataagatcaaggtgatattcacctgaaaa |
218776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 567
Target Start/End: Complemental strand, 218647 - 218568
Alignment:
| Q |
488 |
aacttaccaacaaaatcaacgaacttgttcttgcgaagggttcgtctagaaactattagaacacgagggagaatgccaga |
567 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| |||| |
|
|
| T |
218647 |
aacttaccgacgaaatcgacgaacttgttcttacgaagggttcgtctagaaacgattagaacatgaggaagaatgacaga |
218568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 49630193 - 49630135
Alignment:
| Q |
253 |
ggatcaatgtcttctccttcacatagaagcacaccatggattggttcaaagctatctaa |
311 |
Q |
| |
|
||||||||||| || |||||||| ||||| || ||||||||||| |||||||||||||| |
|
|
| T |
49630193 |
ggatcaatgtcctcaccttcacaaagaagaactccatggattggctcaaagctatctaa |
49630135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University