View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_31 (Length: 290)
Name: NF9910_low_31
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 28730237 - 28730500
Alignment:
| Q |
9 |
agcacagactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaacttattaacgacaaatttcatatagttttacttca |
108 |
Q |
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| T |
28730237 |
agcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacggtgtaaacttattaactacaaatttcatatagttttacttca |
28730336 |
T |
|
| Q |
109 |
gcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcat |
208 |
Q |
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|||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28730337 |
gcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggcat |
28730436 |
T |
|
| Q |
209 |
aggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagagcagag |
272 |
Q |
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| T |
28730437 |
gggagacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagagcagag |
28730500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 33078592 - 33078556
Alignment:
| Q |
57 |
atgaacaacagtgtaaacttattaacgacaaatttca |
93 |
Q |
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| T |
33078592 |
atgaacaacagtgtaaacttattaactacaaatttca |
33078556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
| Q |
110 |
cagagaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaat |
181 |
Q |
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| T |
33078557 |
cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 38120660 - 38120926
Alignment:
| Q |
9 |
agcacagactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaacttattaacgacaaatttcatatagttttacttca |
108 |
Q |
| |
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|||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || || |||||| |
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| T |
38120660 |
agcacaaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaacttattaactacaaatttcatagagattcacttca |
38120759 |
T |
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| Q |
109 |
gcagagaatgaagtaaatcgcaatcttcgtcat---catcgaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgagg |
205 |
Q |
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|||||||| ||| |||| |||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
38120760 |
gcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgagg |
38120859 |
T |
|
| Q |
206 |
cataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagagcagag |
272 |
Q |
| |
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| T |
38120860 |
catgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaggagcagag |
38120926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 38609401 - 38609197
Alignment:
| Q |
68 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
167 |
Q |
| |
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||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
38609401 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38609302 |
T |
|
| Q |
168 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagag |
267 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| || || ||||||| ||||||||||||||||||| ||||||||| |
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| T |
38609301 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagag |
38609202 |
T |
|
| Q |
268 |
cagag |
272 |
Q |
| |
|
||||| |
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|
| T |
38609201 |
cagag |
38609197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 38794184 - 38793980
Alignment:
| Q |
68 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
167 |
Q |
| |
|
||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
38794184 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38794085 |
T |
|
| Q |
168 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagag |
267 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| || || ||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
38794084 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagag |
38793985 |
T |
|
| Q |
268 |
cagag |
272 |
Q |
| |
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||||| |
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|
| T |
38793984 |
cagag |
38793980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 34592957 - 34592845
Alignment:
| Q |
113 |
agaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcata |
209 |
Q |
| |
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|||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
210 |
ggagacacacctg |
222 |
Q |
| |
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||||||||||||| |
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|
| T |
34592857 |
ggagacacacctg |
34592845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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