View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_32 (Length: 289)
Name: NF9910_low_32
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 46441908 - 46441639
Alignment:
| Q |
16 |
caataatgaat-agaacaaaaatacaaacatgaaacacatagagtcaactttcgtaagatgtgataatgattattaattaaataagtaaagttttatata |
114 |
Q |
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| T |
46441908 |
caataatgaattagaacaaaaatacaaacatgaaacacatagagtcaactttcgtaagatgtgataatgattattaattaaataattaaaattttatata |
46441809 |
T |
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| Q |
115 |
attaagaaatttgatatatgtacatgaatatggacataaataaataaatctaaaatggtacctcgtaaaaaattctctaagttcattctcataaaccgga |
214 |
Q |
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| T |
46441808 |
attaagaaatttgatatatgtacatgaatatggacataaataaataaatctaaaatggtacctcgtaaaaaattccctaagttcattctcataaaccgga |
46441709 |
T |
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| Q |
215 |
caatctttggaaaatgtcataaagatggttctatcatcaactagctgtctggtctccctcttcttctcac |
284 |
Q |
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| T |
46441708 |
caatctttggaaaatgtcataaagatggttctatcatcaactagctgtctggtctccctcctcttttcac |
46441639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 18330957 - 18331057
Alignment:
| Q |
160 |
aaatctaaaatggtacctcgtaaaaaattctctaagttcattctcataaaccggacaatctttggaaaatgtcataaagatggttctatcatcaactagc |
259 |
Q |
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| T |
18330957 |
aaatcaaaaatgataccttgtgaagaattctctaatttcattctcagaaataggatagcctttagaaaatgtcatgaagagggtcctatcatcaactagc |
18331056 |
T |
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| Q |
260 |
t |
260 |
Q |
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| T |
18331057 |
t |
18331057 |
T |
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