View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9910_low_34 (Length: 281)

Name: NF9910_low_34
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9910_low_34
NF9910_low_34
[»] chr8 (3 HSPs)
chr8 (150-268)||(7246532-7246650)
chr8 (13-92)||(7246395-7246474)
chr8 (166-222)||(13137222-13137278)
[»] chr4 (1 HSPs)
chr4 (166-268)||(52051973-52052075)
[»] chr2 (1 HSPs)
chr2 (166-268)||(18199801-18199903)
[»] chr7 (1 HSPs)
chr7 (164-223)||(42091957-42092016)
[»] scaffold0001 (1 HSPs)
scaffold0001 (166-255)||(399100-399189)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 150 - 268
Target Start/End: Original strand, 7246532 - 7246650
Alignment:
Q  150 aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7246532 aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca 7246631  T
Q  250 tctccatttcttgccatct 268  Q
    |||||||||||||||||||    
T  7246632 tctccatttcttgccatct 7246650  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 7246395 - 7246474
Alignment:
Q  13 atcatcacaagccatggatgaagtagagaaagggaaagaagaaggtgagtttatgctgctgctgttgttgttcaaggaga 92  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7246395 atcatgacaagccatggatgaagtagagaaagggaaagaagaaggtgagtttatgctgctgctgttgttgttcaaggaga 7246474  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 13137222 - 13137278
Alignment:
Q  166 ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactt 222  Q
    ||||||| ||||||||||||| |||| ||||||||||||||| | |||||| |||||    
T  13137222 ttccacaagctttcttgaacgatttcgacctctgtgcatgtgacgttcacaatactt 13137278  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 52052075 - 52051973
Alignment:
Q  166 ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca 265  Q
    ||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||    
T  52052075 ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctccatttctttcca 52051976  T
Q  266 tct 268  Q
    |||    
T  52051975 tct 52051973  T

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Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 18199801 - 18199903
Alignment:
Q  166 ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca 265  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||||||||| || |||    
T  18199801 ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctccatttttttcca 18199900  T
Q  266 tct 268  Q
    |||    
T  18199901 tct 18199903  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 42092016 - 42091957
Alignment:
Q  164 agttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtacttt 223  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  42092016 agttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt 42091957  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 399189 - 399100
Alignment:
Q  166 ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctcca 255  Q
    |||||||||||||||||||||||| |  || | ||||||||| |  ||||||||||| |||||||| ||||||||||| ||||| |||||    
T  399189 ttccacaggctttcttgaacggttgcggccacggtgcatgtggcgctcacagtacttggagtctgggtatgcttccttcgagcacctcca 399100  T

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