View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_35 (Length: 278)
Name: NF9910_low_35
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 41486296 - 41486058
Alignment:
| Q |
24 |
acagaagacgtcagctgaatgatggaaccttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaa |
123 |
Q |
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| T |
41486296 |
acagaagacgccagctgaatgatggaatcttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaa |
41486197 |
T |
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| Q |
124 |
gttggaaagaaaagggttcatgaagataacattgtgtgtttacagatgttagcttgtttagagtgccgacaatgacaacaaagtatgattctaataa-at |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41486196 |
gttggaaagaaaagggttcatgaagataacattgtgtgtttaccgatgttagcttgtttagagtgccgacaatgacaacaaagtatgattctaataatat |
41486097 |
T |
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| Q |
223 |
ctcaggttcttctatattttttgtattactctcagaact |
261 |
Q |
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| T |
41486096 |
ctcaggttcttctatattttttgtattactctcagaact |
41486058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 42 - 258
Target Start/End: Complemental strand, 41483171 - 41482947
Alignment:
| Q |
42 |
atgatggaaccttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggtt |
141 |
Q |
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| T |
41483171 |
atgatggaatcttctatgttatcgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtgaagtttgaaagaaaagggtt |
41483072 |
T |
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| Q |
142 |
catgaagataacattgtgtgtttacagatgttagcttgtttagagtgccga-------caatgacaacaaagtatgattctaataa-atctcaggttctt |
233 |
Q |
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| T |
41483071 |
catatagataacattgtgtgtttaccgatgttggcttgtttagagtgctgacaatgaccaatgacaacaaagtatgattctaacaacacctcaagttctt |
41482972 |
T |
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| Q |
234 |
ctatattttttgtattactctcaga |
258 |
Q |
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| T |
41482971 |
ctatattttctgttttactttcaga |
41482947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 69 - 261
Target Start/End: Original strand, 45384644 - 45384840
Alignment:
| Q |
69 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcat-gaagataacatt--gtgtgttta |
165 |
Q |
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| T |
45384644 |
tattcttttaactgaaacaagaaaatggaaacggtgatagataaactgcggtgaagttggaaagaaaagggttaatataagataacagtgcgggtgttta |
45384743 |
T |
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| Q |
166 |
cagatgttagcttgtttagagtgccgacaatgacaacaaagtatgattctaataa-atctcaggttcttctatattttttgtattactctcagaact |
261 |
Q |
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| T |
45384744 |
ccgatgtcaacttgtttagagtgctgtcaatgacaacaaagtatgcttctaacaacatctcaagttcttctatattttcattattactttcagaact |
45384840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 5671481 - 5671563
Alignment:
| Q |
69 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagata |
151 |
Q |
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| T |
5671481 |
tattcttttaactgaaacatgaaaggaaaaacgatgatagataaactgcggtgaagttggaaagaaaagtgttaatgtagata |
5671563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 5680978 - 5681045
Alignment:
| Q |
69 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaa |
136 |
Q |
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| T |
5680978 |
tattcttttaactgaaacaagaaaggaaaaacgataatagataaactgcggtgaagttggaaagaaaa |
5681045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 5685591 - 5685643
Alignment:
| Q |
102 |
gtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagataaca |
154 |
Q |
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| T |
5685591 |
gtgatagataaactgcggtgaatttggaaagaaaagggttaatgtagataaca |
5685643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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