View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9910_low_39 (Length: 254)
Name: NF9910_low_39
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 2066881 - 2066702
Alignment:
| Q |
65 |
caagcagatcccatccaacatgtttctatccaatttgaacaaaaataaatctacccaaaatgtttcattcttttttatttcgatgctacgcaaaacaagg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2066881 |
caagcagatcccatccaacatgtttctatccaatttgaacaaaaataaatctacccaacatgtttcattcttttttatttcgatgctacgcaaaacaagg |
2066782 |
T |
|
| Q |
165 |
aaagctttttaaacatatgcatgcatgcatgcatattcattccttcgtcaacattttctctttctatttgtttgcctttg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2066781 |
aaagctttttaaacatatgcatgcatgcatgcatattcattccttcgtcaactttttctctttctatttgtttgcctttg |
2066702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University