View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_4 (Length: 521)
Name: NF9910_low_4
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Complemental strand, 47036228 - 47035736
Alignment:
| Q |
11 |
atcaatttaagagctgctttgtgagttaccctggaatattgtcgctaccactaacaagttacaagtcactttgccggattaataacatggaggctaatag |
110 |
Q |
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| T |
47036228 |
atcaatttaggagctgatttgtgtgttaccctgggatattgtcgctaccacttacaagttacaagtccctttgcaggtttaataacatggaggctaatag |
47036129 |
T |
|
| Q |
111 |
cttttggtccaatgtttgcagaattcatgctccagagcatgttagatactttatttggctagtctgtcatggaagaatgatctttgctttgaaaaagtcg |
210 |
Q |
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| T |
47036128 |
cttttggtccaatgtttggagaattcatgctccagagcgtgttagatgctttatttggctagtttgtcatggaagactgttcattgatttgaaaaagtcg |
47036029 |
T |
|
| Q |
211 |
cgtaatcaattaggtgattcgtgctgcaatttttgtgataatgaaattgaatcaattttacatgttctccgcgagtgtctgctagctagggcgatataga |
310 |
Q |
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| T |
47036028 |
tgtaatcaattaggtgattcgtgctgcaatttttgtggtaatgaaattgaatcaattttacatgttctccgcgagtgtctgctagctagggcgatataga |
47035929 |
T |
|
| Q |
311 |
tgcatttggctccgtggaaagatcgtgaagctttctttgaaatgtgattttaaggattggttagagttatgtttaagcaaacgcaatgagattaatatgt |
410 |
Q |
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| T |
47035928 |
tgcatttggctccgtggaaagatcgtgaagctttctttgaaatgtgattttaaggattggttagagttatgtttgagcaaacgcaatgagattaatatgt |
47035829 |
T |
|
| Q |
411 |
gaattttgtggtctggtgaatgtactatagcttgtcactttttgtggcaatggaagaataaggaggttcgtgttgaaggtttcactcgccttc |
503 |
Q |
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| T |
47035828 |
gaattttgtggtctggtgaatgtaccatagcttgtcactttttgtggcaatggaagaataaggaggtttgtgttgaaggtttcactcgccttc |
47035736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 498
Target Start/End: Original strand, 36571596 - 36571792
Alignment:
| Q |
304 |
atatagatgcatttggctccgtggaaagatcgtgaagctttctttgaaatgtgattttaaggattggttagagttatgtttaagcaaacgcaatgagatt |
403 |
Q |
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|||| |||| |||||| ||| ||||| ||||| ||||||||||| || ||||||||||||||||||| |||||| ||| | |||| |||||| || |
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| T |
36571596 |
atatggatgtatttggttccatggaaggatcgcaaagctttctttagaa-gtgattttaaggattggttcgagttaaatttgaacaaaatgaatgaggtt |
36571694 |
T |
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| Q |
404 |
aatatgtgaatttt---gtggtctggtgaatgtactatagcttgtcactttttgtggcaatggaagaataaggaggttcgtgttgaaggtttcactcg |
498 |
Q |
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| T |
36571695 |
agtatgaaaattattgtgtggtctggtgtatgggctataacttgtcactcattgcaacaatgaaagaataagaaggttcatgttgaaggtttcactcg |
36571792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 364
Target Start/End: Complemental strand, 44495644 - 44495523
Alignment:
| Q |
242 |
tttgtgataatgaaattgaatcaattttacatgttctccgcgagtgtctgctagctagggcgatatagatgcatttggctccgtggaaagatcgtgaagc |
341 |
Q |
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|||||| ||| |||||| ||||||||||||||| ||||| |||||||| |||| ||||| |||||| |||||| ||| | | | || |||||||||| |
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| T |
44495644 |
tttgtggtaacgaaatttaatcaattttacatgctctccacgagtgtccgctaactaggacgatatgaatgcatctggtttcaggaaaggatcgtgaagt |
44495545 |
T |
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| Q |
342 |
tttctttgaaatgtgattttaag |
364 |
Q |
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| T |
44495544 |
tttctttgaaa-gtgattttaag |
44495523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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