View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9910_low_42 (Length: 253)

Name: NF9910_low_42
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9910_low_42
NF9910_low_42
[»] chr5 (3 HSPs)
chr5 (85-152)||(40575228-40575295)
chr5 (14-56)||(40575328-40575370)
chr5 (152-212)||(40575133-40575193)
[»] chr7 (2 HSPs)
chr7 (1-59)||(43834411-43834469)
chr7 (178-234)||(43834855-43834911)


Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 40575295 - 40575228
Alignment:
Q  85 caaccatatgaactcgttcattattttccacagttaaaaaggaaaattgtacatcaaactatgtattg 152  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  40575295 caaccatatgaactcattcattatttgccacagttaaaaaggaaaatgatacatcaaacaatgtattg 40575228  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 40575370 - 40575328
Alignment:
Q  14 gagaattacaactgcagaaagctcttgaaatatgaggctcatt 56  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  40575370 gagaattacaactgcagaaagctcttgaactatgaggctcatt 40575328  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 40575193 - 40575133
Alignment:
Q  152 gagtatcatgtaacttttcaaagccgtaaactatatattttggtttcagtagagatctatc 212  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||  ||||| |||||||    
T  40575193 gagtatcatttaacttttcaaagccataaattatatattttggttttggtagaaatctatc 40575133  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 43834411 - 43834469
Alignment:
Q  1 catggaaaatatggagaattacaactgcagaaagctcttgaaatatgaggctcattcag 59  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  43834411 catggaaaacatagagaattgcaactgcagaaagctcttgaaatatgaggttcattcag 43834469  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 43834855 - 43834911
Alignment:
Q  178 taaactatatattttggtttcagtagagatctatcaggtgcttgctttataatgata 234  Q
    ||||||||||||||||||||||||||||| ||| |||||  ||| ||||||||||||    
T  43834855 taaactatatattttggtttcagtagagacctaacaggttgttggtttataatgata 43834911  T

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