View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_44 (Length: 252)
Name: NF9910_low_44
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 37386563 - 37386809
Alignment:
| Q |
1 |
tatccaagagcattcgttagaatttctcaaatcaataacaaaacataaggaatagcacaacatctttaccaatttgtaattataagnnnnnnnnnnnnnn |
100 |
Q |
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| T |
37386563 |
tatccaagagcactcgttagtatttctcaaatcaataacacaacataaggaatagcacaacatctttaccaatctgtaattataagtttttgttttgatt |
37386662 |
T |
|
| Q |
101 |
nnnatgttgaagttacattggaaataattaattaaataaaagaaaggtttgatcttgaccnnnnnnnnnncagataaagaaaggtttgataaccttgttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37386663 |
tttatgttgaagttacattggaaataattaattaaataaaagaaaggtttgatcttgacc-aaaaaaaaacagataaagaaaggtttgataaccttgttg |
37386761 |
T |
|
| Q |
201 |
gttgtttgtaggtagtcattgacgtgctacatcagatctgtgctcctc |
248 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
37386762 |
gttgtttgtaggtagtcattgacgtgctatatcagatatgtgttcctc |
37386809 |
T |
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