View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_45 (Length: 251)
Name: NF9910_low_45
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 4489121 - 4488888
Alignment:
| Q |
4 |
ttatgacttatgattggcagtcttgcattctgtatgaaagtcggaacttttatgtttcccttacttttgttaacatgactcagcctcacaaaaaccgaat |
103 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4489121 |
ttatgacttatgattggcagtctcgcattctgtatgaaagtcagaacttttatgtttcccttacttttgttaacatgactcaacctcacaaaaaccgaat |
4489022 |
T |
|
| Q |
104 |
tttcaggtgaggagaactgcccaagccttataaacacaatttaggtcgcatatttagtcaatatgtagcaacgatgttgaaataatgtgtatggccaaca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4489021 |
tttcaggtgaggagaactgcccaagccttataaacacaatttaggtcgcatatttagtcaatatgtagcaacgatgttgaaataatgtgtatggccaaca |
4488922 |
T |
|
| Q |
204 |
tgtttagggccgaacatctgaagcgtgaaataat |
237 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
4488921 |
tgttcagggccgaacatctgaagcgtgaaataat |
4488888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 22622523 - 22622291
Alignment:
| Q |
5 |
tatgacttatgattggcagtcttgcattctgtatgaaagtcggaacttttatgtttcccttacttttgttaacatgactcagcctcacaaaaaccgaatt |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |
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| T |
22622523 |
tatgacttatgattggcagtcttgcattctgtatgaaagtcagaacttttatgtttcccttacttttgttaacatgactaaacctcacaaaaaccgactt |
22622424 |
T |
|
| Q |
105 |
ttcaggtgaggagaactgcccaagccttataaacacaatttaggtcgcatatttagtcaatatgtagcaacgatgttgaaataatgtgtatggccaacat |
204 |
Q |
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| T |
22622423 |
ttcaggttaggagaactgcccaagccttataaacacaatttatgtcacatatctagtcaatatgtatcaacgatgttgaaataatgtgtatggccaacat |
22622324 |
T |
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| Q |
205 |
gtttagggccgaacatctgaagcgtgaaataat |
237 |
Q |
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| T |
22622323 |
tttcagggctgaacatctgaaacgtgaaataat |
22622291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 14245379 - 14245211
Alignment:
| Q |
4 |
ttatgacttatgattggcagtcttgcattctgtatgaaagtc--ggaacttttatgtttcccttacttttgttaacatgactcagcctcacaaaaaccga |
101 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
14245379 |
ttatgacttatgattggcagtcttgcattctgtatcaaagtcagggaacttttatgtttcccttacttttgctaacatgactcaacctcacaaaaaccga |
14245280 |
T |
|
| Q |
102 |
attttcaggtgaggagaactgcccaagccttataaacacaatttaggtcgcatatttagtcaatatgta |
170 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
14245279 |
tttttcaggtgaggagaactgcgcaagccttataaacacaacttaggtcacatatttagtcaatgtgta |
14245211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 6355929 - 6355761
Alignment:
| Q |
4 |
ttatgacttatgattggcagtcttgcattctgtatgaaagtc--ggaacttttatgtttcccttacttttgttaacatgactcagcctcacaaaaaccga |
101 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |
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| T |
6355929 |
ttatgacttatgattggcagtcttgcattctgtatcaaagtcagggaacttttatgtttcccttacttttgctaacatgactcaacctcacaaaaatcga |
6355830 |
T |
|
| Q |
102 |
attttcaggtgaggagaactgcccaagccttataaacacaatttaggtcgcatatttagtcaatatgta |
170 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
6355829 |
tttttcaggtgaggagaactgcgcaagccttataaacacaacttaggtcacatatttagtcaatgtgta |
6355761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 1410366 - 1410230
Alignment:
| Q |
4 |
ttatgacttatgattggcagtcttgcattctgtatgaaagtc--ggaacttttatgtttcccttacttttgttaacatgactcagcctcacaaaaaccga |
101 |
Q |
| |
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|||||||||||||||||||||| |||||||||| | |||||| ||||||||||| | ||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
1410366 |
ttatgacttatgattggcagtcctgcattctgtgtcaaagtcagggaacttttatatatccgttacttttgctaacatgactcaacctcacaaaaaccga |
1410267 |
T |
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| Q |
102 |
attttcaggtgaggagaactgcccaagccttataaac |
138 |
Q |
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|||| ||||||||||||||| ||| ||||||||||| |
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| T |
1410266 |
cttttaaggtgaggagaactgtccaggccttataaac |
1410230 |
T |
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