View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_46 (Length: 250)
Name: NF9910_low_46
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4489223 - 4489462
Alignment:
| Q |
1 |
cctacgtcttcgacggtgatcaaaattcattaaccaatctcttcaagatacaaatgcatcttcattttacagaaaaaatgtttttcaacttttaaatgcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4489223 |
cctacgtcttcgacggtgatcaaaattcattaaccaatctcttcaagatacaaatgcatcttcattttacagaaaaaatgtttttcaacttttaaatgca |
4489322 |
T |
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| Q |
101 |
taaaattgttactttgtattgtnnnnnnnnnnnnnnnnctgttaattgttaaacacaataaacaatcatattacttggtgtgggaacgacaactatacca |
200 |
Q |
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| T |
4489323 |
taaaattgttactttgtattgtaaaagaaaaacaaaaactattaattgttaaacacaataaacaatcatattacttggtgtgggaacgacaactatacca |
4489422 |
T |
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| Q |
201 |
gcatgaacatgtatgagcttgaagataatcattccctttg |
240 |
Q |
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| T |
4489423 |
gcatgaacatgtatgagcttgaagataatcattccctttg |
4489462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 237
Target Start/End: Original strand, 1410687 - 1410843
Alignment:
| Q |
82 |
ttttcaacttttaaatgcctaaaattgttactttgtattgtnnnnnnnnnnnnnnnnctgttaatt-gttaaacacaataaacaatcatattacttggtg |
180 |
Q |
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| T |
1410687 |
ttttcaacttttaaatgcataaaattgttactttgtattgtaaaagaaaaacaaaaattgttaatttgttaaacacaataaacaatgatattacttggtg |
1410786 |
T |
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| Q |
181 |
tgggaacgacaactataccagcatgaacatgtatgagcttgaagataatcattccct |
237 |
Q |
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| T |
1410787 |
tgggaacgccaactataccagcatgaacatgtatgagcttgaagataatcattccct |
1410843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 14245637 - 14245724
Alignment:
| Q |
146 |
ttgttaaacacaataaacaatcatattacttggtgtgggaacgacaactataccagcatgaacatgtatgagcttgaagataatcatt |
233 |
Q |
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| T |
14245637 |
ttgttaaacacaataaacaatcatattacttgatgtgggaacgccaactataccagcatggacatgtatgagcttgaagataatcatt |
14245724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 14245486 - 14245538
Alignment:
| Q |
6 |
gtcttcgacggtgatcaaaattcattaaccaatctcttcaagatacaaatgca |
58 |
Q |
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| T |
14245486 |
gtcttcgacggtgatcaaacttagttaaccaatcaattcaagataaaaatgca |
14245538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 6356208 - 6356294
Alignment:
| Q |
147 |
tgttaaacacaataaacaatcatattacttggtgtgggaacgacaactataccagcatgaacatgtatgagcttgaagataatcatt |
233 |
Q |
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| T |
6356208 |
tgttaaacacaataaacaatcatattacttgatgtgggaacgccaactataccagcatggacatgtatgagcttgaagataatcatt |
6356294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 6356135 - 6356182
Alignment:
| Q |
73 |
aaaaaatgtttttcaacttttaaatgcctaaaattgttactttgtatt |
120 |
Q |
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||||| ||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
6356135 |
aaaaagtgtttatcaacttttaaatgcaaaaaattgttactttgtatt |
6356182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 6356036 - 6356088
Alignment:
| Q |
6 |
gtcttcgacggtgatcaaaattcattaaccaatctcttcaagatacaaatgca |
58 |
Q |
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||||||||||||||||||| || |||||||||| ||||||||| ||||||| |
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| T |
6356036 |
gtcttcgacggtgatcaaacttagttaaccaatcaattcaagataaaaatgca |
6356088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 22622628 - 22622683
Alignment:
| Q |
3 |
tacgtcttcgacggtgatcaaaattcattaaccaatctcttcaagatacaaatgca |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22622628 |
tacgtcttcgacggtgatcaaaattcattaaccaatctcttcaagatacaaatgca |
22622683 |
T |
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