View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_47 (Length: 249)
Name: NF9910_low_47
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34573586 - 34573835
Alignment:
| Q |
1 |
taaagtactgacatttattattcnnnnnnntactaacatttgtcattgaaaacaaaatcagcataatatcatatacaaaaacatgatcatctaatacaag |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34573586 |
taaagtactgacatttattattcaaaaaaatactaacatttgtcattgaaaacaaaatcagcataatatcatatacaaaaacatgatcatctaatacaag |
34573685 |
T |
|
| Q |
101 |
gaaacaaaccacaaaatttgttgaaaaatttgccgtttttgttagaacattgaagctcgaaccaagtgggtggcaatatttgcttattatcctcaa---- |
196 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34573686 |
gaaacaaaccacaaaatttgttgaaaaatttgccgttcttgttagaacattgaagctcgaaccaagtgggtggcaatatttgcttattatcctcaaaacc |
34573785 |
T |
|
| Q |
197 |
-----aaccaaccggaatccgtacctcaccaacaaaatccactacctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34573786 |
aaccgaaccaaccggaatccgtacctcaccaacaaaatccactacctttg |
34573835 |
T |
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