View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_48 (Length: 249)
Name: NF9910_low_48
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 937658 - 937418
Alignment:
| Q |
9 |
agcacagacagacgtgattgtacacaatgcaacaagaaagaacgacaacataatgatttcataattcatccgcgtctctagtctacttctttttgatgga |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
937658 |
agcacaaacagacgtgattgtacacaatgcaacaagaaagaacgacaacataatgatttcataattcatccgcgtctctagtctacttcttttcgatgga |
937559 |
T |
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| Q |
109 |
gctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagcacaa |
208 |
Q |
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| T |
937558 |
gctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagcacaa |
937459 |
T |
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| Q |
209 |
tgttggttgatccaagtgataacttcttaccatcgatttcc |
249 |
Q |
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| T |
937458 |
tgttggttgatccaagtgataacttcttaccatcgatttcc |
937418 |
T |
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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 16942045 - 16941942
Alignment:
| Q |
106 |
ggagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagca |
205 |
Q |
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||||||||||| ||||| ||||||||||| ||||| || |||||||| || |||||||||| | ||| ||||||||||||| |||||||||||||| | |
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| T |
16942045 |
ggagctcctgagttgttgagcatagcttttgtctcacgaccacaatacacggcaacaccaaccacacaattagtattcttaagttcacatcctctaagta |
16941946 |
T |
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| Q |
206 |
caat |
209 |
Q |
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|||| |
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| T |
16941945 |
caat |
16941942 |
T |
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