View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_5 (Length: 508)
Name: NF9910_low_5
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 36595102 - 36595590
Alignment:
| Q |
1 |
gtgttatcaaccaccacagtcactccctttttgtgtgcaatcctagctagctcaggagtattggccacattcaagcttggatttgcaattgactcaaaat |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36595102 |
gtgttatcaaccaccacagttactccctttttgtgtgcaatcctagcaagctcaggagtattggccacattcaagcttggatttgcaattgactcaaaat |
36595201 |
T |
|
| Q |
101 |
acagcactttggtcttcccttccacaattgcattctcaactgcttccaaatcggatatgtcaacaaaagttgtggttatgttgcatgtcctcacaaagaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36595202 |
acagcactttggtcttcccttccacaattgcattctcaactgcttccaaatcggatatgtcaacaaaagttgtggttatgttgcatgtcctcacaaagaa |
36595301 |
T |
|
| Q |
201 |
atgctgcaaaagtgcatgggtcccaccataaagagtactagaagccacaacatgtccgccgtggctgcagagctgtaacaaaactgcagaaatggcggac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36595302 |
atgctgcaaaagtgcatgggtcccaccataaagagtactagaagccacaacatgtccgccgtggctgcagagctgtaacaaaactgcagaaatggcggac |
36595401 |
T |
|
| Q |
301 |
atgccactggctgtacaataggcggcctcagtgccttcgagggccgccatcttacggctgagattgaggacagttgggttgaaatgacggctgtagacgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36595402 |
atgccactggctgtacaataggcggcctcagtgccttcgagggccgccatcttacggctgagattgaggacggttgggttgaaatgacggctgtagacgt |
36595501 |
T |
|
| Q |
401 |
agtaatcgccttcatgaccaagctctccagcaaatattttgcggagagtatctggttccatgacggtgaacgtggcagaggcctcaatc |
489 |
Q |
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| T |
36595502 |
agtaatcgccttcatgaccaagctctccagcaaatattttgcggagagtatctggttccatgacggtgaacgtggcagaggcctcaatc |
36595590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 399
Target Start/End: Complemental strand, 34809859 - 34809749
Alignment:
| Q |
289 |
gaaatggcggacatgccactggctgtacaataggcggcctcagtgccttcgagggccgccatcttacggctgagattgaggacagttgggttgaaatgac |
388 |
Q |
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||||||||||||||||| |||| |||||| || ||||| || || |||||||| || ||||| |||| ||| || ||||| || |||||||| |||| |
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| T |
34809859 |
gaaatggcggacatgccgctggatgtacagtaagcggcttctgtaccttcgagagcggccattagacgggagaggttaaggacggtagggttgaagtgac |
34809760 |
T |
|
| Q |
389 |
ggctgtagacg |
399 |
Q |
| |
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||||||||||| |
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| T |
34809759 |
ggctgtagacg |
34809749 |
T |
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