View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9910_low_54 (Length: 240)

Name: NF9910_low_54
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9910_low_54
NF9910_low_54
[»] chr1 (2 HSPs)
chr1 (122-223)||(38821269-38821371)
chr1 (58-112)||(1176839-1176893)
[»] chr7 (2 HSPs)
chr7 (63-114)||(30857906-30857957)
chr7 (58-114)||(9412024-9412080)
[»] chr5 (1 HSPs)
chr5 (63-114)||(5187832-5187883)
[»] chr4 (4 HSPs)
chr4 (63-114)||(22681881-22681932)
chr4 (63-114)||(24775785-24775836)
chr4 (58-114)||(16555516-16555572)
chr4 (74-114)||(23433498-23433538)
[»] chr3 (1 HSPs)
chr3 (61-114)||(47665912-47665965)
[»] chr8 (4 HSPs)
chr8 (58-114)||(12281125-12281181)
chr8 (58-114)||(12281423-12281479)
chr8 (58-114)||(15156182-15156238)
chr8 (74-114)||(23123339-23123379)
[»] chr2 (1 HSPs)
chr2 (58-114)||(17346032-17346087)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 38821269 - 38821371
Alignment:
Q  122 taattaaacactt-agttggattactgaaattaaatgtcttgatcaaatactgaacagatattgcaacatcttctcttggttaccgggtggttattaggt 220  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821269 taattaaacactttagttggattactgaaattaaatctcttgatcaaatattgaacagatattgcaacatcttctcttggttaccgggtggttattaggt 38821368  T
Q  221 att 223  Q
    |||    
T  38821369 att 38821371  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 1176893 - 1176839
Alignment:
Q  58 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaa 112  Q
    |||| ||||||| |||||||||||||||||||||| | || |||||| |||||||    
T  1176893 gagggggtgcaaaattgcacaattgacaaaagatagggggtaaaagtgcaattaa 1176839  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 30857906 - 30857957
Alignment:
Q  63 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    ||||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  30857906 ggtgcaaaattgcacaattgacaaaagataagagacaaaagtgcaattaagc 30857957  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 9412080 - 9412024
Alignment:
Q  58 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  9412080 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 9412024  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 5187832 - 5187883
Alignment:
Q  63 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    ||||||| ||||||||||| |||||||||||| || |||||| |||||||||    
T  5187832 ggtgcaaaattgcacaattaacaaaagataaggggcaaaagtgcaattaagc 5187883  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 22681881 - 22681932
Alignment:
Q  63 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    ||||||| ||||||||||| |||||||||| |||| |||||| |||||||||    
T  22681881 ggtgcaaaattgcacaattaacaaaagataggagggaaaagtgcaattaagc 22681932  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 24775785 - 24775836
Alignment:
Q  63 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    ||||||| || ||||||||||||||||||| |||| |||||| |||||||||    
T  24775785 ggtgcaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagc 24775836  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 16555572 - 16555516
Alignment:
Q  58 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  16555572 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 16555516  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 23433498 - 23433538
Alignment:
Q  74 gcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    |||||||||||||||||||||||| | |||| |||||||||    
T  23433498 gcacaattgacaaaagataagaggcagaagtgcaattaagc 23433538  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 47665965 - 47665912
Alignment:
Q  61 gaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    ||||||||| || ||||||||||||||  ||||| ||||||||| |||||||||    
T  47665965 gaggtgcaaaatcgcacaattgacaaactataaggggaaaaagtgcaattaagc 47665912  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 12281181 - 12281125
Alignment:
Q  58 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    |||||||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  12281181 gaggaggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 12281125  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 12281423 - 12281479
Alignment:
Q  58 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  12281423 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 12281479  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 15156182 - 15156238
Alignment:
Q  58 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    |||| ||||||| || ||||||||||||||||||| | || |||||| |||||||||    
T  15156182 gagggggtgcaaaatcgcacaattgacaaaagataggggggaaaagtgcaattaagc 15156238  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 23123379 - 23123339
Alignment:
Q  74 gcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    ||||||||||||||||||| |||| |||||| |||||||||    
T  23123379 gcacaattgacaaaagataggagggaaaagtgcaattaagc 23123339  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 17346032 - 17346087
Alignment:
Q  58 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 114  Q
    |||||||||||| || ||||||||  |||||||||| |||||||||| |||||||||    
T  17346032 gaggaggtgcaaaatcgcacaattagcaaaagataa-aggaaaaagtgcaattaagc 17346087  T

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