View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9910_low_58 (Length: 239)
Name: NF9910_low_58
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_58 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 26096806 - 26096585
Alignment:
| Q |
18 |
ggttggtctagtggtgtttataccaggaggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26096806 |
ggttggtctagtggtgtttataccaggaggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtg |
26096707 |
T |
|
| Q |
118 |
tggcagcacgactttcgaaggagaaagcatgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
26096706 |
tggcagcacgactttcgaaggagaaagcatgggaccaagtcgttttcaacgaggaactcttttatccgtcgcatcctggttatgacgggcttcatgcttc |
26096607 |
T |
|
| Q |
218 |
taaaagaactatggatatatat |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26096606 |
taaaagaactatggatatatat |
26096585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 26120093 - 26119872
Alignment:
| Q |
18 |
ggttggtctagtggtgtttataccaggaggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtg |
117 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26120093 |
ggttggtctagtggcgtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtg |
26119994 |
T |
|
| Q |
118 |
tggcagcacgactttcgaaggagaaagcatgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttc |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26119993 |
tggcagcacgacttttgaaggagaaagcatgggaccaagtcgttttcaacgaggaactctttcatccatcatatcctggttatgacgggcttcatgctgc |
26119894 |
T |
|
| Q |
218 |
taaaagaactatggatatatat |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26119893 |
taaaagaactatggatatatat |
26119872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 26084516 - 26084310
Alignment:
| Q |
33 |
gtttataccaggaggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttt |
132 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084516 |
gtttataccacgaggatatttgtttacaattctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttt |
26084417 |
T |
|
| Q |
133 |
cgaaggagaaagcatgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatgga |
232 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26084416 |
cgaagggtaatgcatgggaccaagccgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatgga |
26084317 |
T |
|
| Q |
233 |
tatatat |
239 |
Q |
| |
|
||||||| |
|
|
| T |
26084316 |
tatatat |
26084310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 26126723 - 26126529
Alignment:
| Q |
45 |
aggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaag |
144 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | |
|
|
| T |
26126723 |
aggatatgggtttacaattctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggctgcacgactttcaaaagagaatg |
26126624 |
T |
|
| Q |
145 |
catgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatat |
239 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26126623 |
catgggaccaaggcgttttcaacgaggaactcttttatccgtcgcatcctggttatgacgggcttcatgctgctaaaagaactatggatatatat |
26126529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 26064779 - 26064589
Alignment:
| Q |
45 |
aggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaag |
144 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||||| |
|
|
| T |
26064779 |
aggatatgggtttacaattctggtttcttctatattagaccaaccattccttcaattgagcttttggatcgtgtggcggcaaggctttccaaggagaaag |
26064680 |
T |
|
| Q |
145 |
catgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatat |
235 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
26064679 |
catgggaccaagccgtttttaacgaggaactcttttatccatcgcatcctggttatgacgggcttcatgctgctaaaaggactatggatat |
26064589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 26036139 - 26035941
Alignment:
| Q |
37 |
ataccaggaggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaa |
136 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| || |
|
|
| T |
26036139 |
ataccatgaggatatgggtttacaattccggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtcgcgacacggctttccaa |
26036040 |
T |
|
| Q |
137 |
ggagaaagcatgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatat |
235 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
26036039 |
ggaggttgcatgggaccaagccgttttcaacgaggaactattttatccgtcacaccctggttatgaagggcttcatgctgctagaagaactatggatat |
26035941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 6773416 - 6773262
Alignment:
| Q |
81 |
agaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaagcatgggaccaagttgttttcaacgaggaactctttt |
180 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || || || | || ||||| || |||||||||||||| |||| ||||| || || ||||| |||| |
|
|
| T |
6773416 |
agaccaacacttccttcaattgagcttttggatcgcgttgcggaccggctttctaaagagaaagcatgggatcaagcagtttttaatgaagaactttttt |
6773317 |
T |
|
| Q |
181 |
atccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatat |
235 |
Q |
| |
|
| || ||||||||||||||||| || ||||||||| | || ||||| |||||||| |
|
|
| T |
6773316 |
acccttcacatcctggttatgatggacttcatgctgcaaagagaacaatggatat |
6773262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University