View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9910_low_59 (Length: 236)
Name: NF9910_low_59
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_59 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 5939717 - 5939939
Alignment:
| Q |
13 |
aagaactagattatacaagttccactattaaagaaggatgacgagaagtgaaattcttttcccaccttggatcgttatgatttcccttaaaacacttcgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5939717 |
aagaactagattatacaagttccactattaaagaaggatgacgaaaagtgaaattcttttcccgccttggatcgttatgatttcccttaaaacacttcgc |
5939816 |
T |
|
| Q |
113 |
ccttatggtggtgggggcttctcatgttaattatggcttggaatttgtcggggttcgcctctattcctcgccttgtcagcatgaatcctaggaatttctc |
212 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5939817 |
ccttatgatggt-ggggcttctcatgttaattatggcttggaatttgtcggggttcgcccctattcctcgccttgtcaacatgaatcctaggaatttctc |
5939915 |
T |
|
| Q |
213 |
agcttggactccaaatgtgcattt |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5939916 |
agcttggactccaaatgtgcattt |
5939939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 5973627 - 5973682
Alignment:
| Q |
25 |
atacaagttccactattaaagaaggatgacgagaagtgaaattcttttcccacctt |
80 |
Q |
| |
|
|||||||||||| |||| ||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
5973627 |
atacaagttccattattgaagaaggatgatgtgaagagaaattcttttcccacctt |
5973682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University