View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_60 (Length: 234)
Name: NF9910_low_60
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_60 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 34687071 - 34686867
Alignment:
| Q |
15 |
gcagagacagttacggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggttttgata |
114 |
Q |
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| T |
34687071 |
gcagagacagttacggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggttttgata |
34686972 |
T |
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| Q |
115 |
ttcgattatttgaaagtcgtgttcgttaaccgttttgagggaaatccaataaataaccatatgactcaacccaaccggttcaaaataaactcgccggttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34686971 |
ttcgattatttgaaagtcgtgttcgttaaccgttttgagggaaatccaataaataaccatatgactcaacccaaccggttcaaaataaactcgccggttc |
34686872 |
T |
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| Q |
215 |
actct |
219 |
Q |
| |
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||||| |
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| T |
34686871 |
actct |
34686867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 26985016 - 26984812
Alignment:
| Q |
15 |
gcagagacagttacggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggttttgata |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
26985016 |
gcagagacagttacggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaattgttggtgtttggagggaaagggtttttata |
26984917 |
T |
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| Q |
115 |
ttcgattatttgaaagtcgtgttcgttaaccgttttgagggaaatccaataaataaccatatgactcaacccaaccggttcaaaataaactcgccggttc |
214 |
Q |
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| T |
26984916 |
ttcgattatttgaaagtcgtgttcgttaaccgttttgagggaaatccaataaataaccatatgactcaacccaaccggttcaaaataaactcgccggttc |
26984817 |
T |
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| Q |
215 |
actct |
219 |
Q |
| |
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||||| |
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| T |
26984816 |
actct |
26984812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 27024804 - 27024702
Alignment:
| Q |
24 |
gttacggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggttttgatattcgattat |
123 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||| | |||||||||||||||| |
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| T |
27024804 |
gttacggtggtccggtgagggacggttacggtggtcggagaataacgcggttagttgaagtgttgatg-ttggagggaaagag-tttgatattcgattat |
27024707 |
T |
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| Q |
124 |
ttgaa |
128 |
Q |
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||||| |
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| T |
27024706 |
ttgaa |
27024702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 27024835 - 27024793
Alignment:
| Q |
17 |
agagacagttacggtggtccggcgagggacggttacggtggtc |
59 |
Q |
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| T |
27024835 |
agagacagttacggtggtccggtgagggacggttacggtggtc |
27024793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 27080454 - 27080498
Alignment:
| Q |
83 |
atgttggtgtttggagggaaagggttttgatattcgattatttgaa |
128 |
Q |
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||||||||||| |||||||||||||||||||||| | ||||||||| |
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| T |
27080454 |
atgttggtgtt-ggagggaaagggttttgatatttggttatttgaa |
27080498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 30227456 - 30227361
Alignment:
| Q |
15 |
gcagagacagttacggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggtttt |
110 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
30227456 |
gcagagacggttacggtggtccggcgagagacggttacggtggtcggagaatggcgcggttagttgaagtgttggtgtttggagggaaatggtttt |
30227361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 30227293 - 30227240
Alignment:
| Q |
166 |
aataaccatatgactcaacccaaccggttcaaaataaactcgccggttcactct |
219 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30227293 |
aataaccatattactcaacccaaccggttcaaaataaactcgccggttcactct |
30227240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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