View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9910_low_63 (Length: 230)
Name: NF9910_low_63
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_63 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 34573135 - 34573320
Alignment:
| Q |
17 |
caactatcacatcctaaggtaataaatataacaaactatcaagtaattgtaactaccttaaacaatattcaactaattctgaaaaatctattttataaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34573135 |
caactatcacatcctaaggtaataaatataacaaactatcaagtaattgtaactaccttaaacaatattcaactaattctgaaaaatctattttataaca |
34573234 |
T |
|
| Q |
117 |
aactcaagatttggacacattatgttacgctaattagcaagtattactctgcatatagatcaaggtgtatgctattgaaacactac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
34573235 |
aactcaagatttggacacattatgttacgctaattagcaagtattactctgcatatagttcaagttgtatgctattgaaacactac |
34573320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 96
Target Start/End: Complemental strand, 2622063 - 2622032
Alignment:
| Q |
65 |
gtaactaccttaaacaatattcaactaattct |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2622063 |
gtaactaccttaaacaatattcaactaattct |
2622032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 44565182 - 44565149
Alignment:
| Q |
63 |
ttgtaactaccttaaacaatattcaactaattct |
96 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
44565182 |
ttgtaactaccttaaataatattcaactaattct |
44565149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 45518928 - 45518960
Alignment:
| Q |
66 |
taactaccttaaacaatattcaactaattctga |
98 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
45518928 |
taactaccttaaacattattcaactaattctga |
45518960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University