View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_64 (Length: 208)
Name: NF9910_low_64
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 22069735 - 22069559
Alignment:
| Q |
14 |
caaaggtgtaattagaagggaaacctaggccatcatcaccatgtaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctct |
113 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22069735 |
caaacgtgtaattacaagggaaacctaggccatcatcaccatgaaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctct |
22069636 |
T |
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| Q |
114 |
ataccccccattgtcctctctatagccagttccgccaaataagcaaagcaatccattgcaggaaccaactatgtagc |
190 |
Q |
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| T |
22069635 |
ataccccccattgtcctctctatagccagttccgccaaataagcaaagcaatccattgcaggaaccaactatgtagc |
22069559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 22063266 - 22063091
Alignment:
| Q |
14 |
caaaggtgtaattagaagggaaacctaggccatcatcaccatgtaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctct |
113 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22063266 |
caaacgtgtaattacaagggaaacctaggccatcatcaccatgaaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctct |
22063167 |
T |
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| Q |
114 |
ataccccccattgtcctctctatagccagttccgccaaataagcaaagcaatccattgcaggaaccaactatgtag |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22063166 |
ataccccccattgtcctctctatagccagttccgccaaataagcaaagcaatccattgcaggaaccaacgatgtag |
22063091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 22080465 - 22080307
Alignment:
| Q |
29 |
aagggaaacctaggccatcatcaccatgtaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctctataccccccattgtc |
128 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22080465 |
aagggaaacctaggccatcatcaccatctaatttttctgatattgtccttgtggctgggttccaaaaacgaagccaattctctctataccccccagtgtc |
22080366 |
T |
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| Q |
129 |
ctctctatagccagttccgccaaataagcaaagcaatccattgcaggaaccaactatgt |
187 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22080365 |
ctctctattgccagttccgccaaataagcaaagcaatccattgcaggaaccaacaatgt |
22080307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 22088203 - 22088041
Alignment:
| Q |
28 |
gaagggaaacctaggccatcatcaccatgtaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctctataccccccattgt |
127 |
Q |
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||||||||| ||||||||||||| || |||||||||||||||| |||||||||| |||||||||| ||||| || |||||||||||||| || | || |
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| T |
22088203 |
gaagggaaatctaggccatcatccaaatctaatttttctgatattgtccttgtggccgggttccaaacacgaattcatttctctctataccctccttcgt |
22088104 |
T |
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| Q |
128 |
cctctctatagccagttccgccaaataagcaaagcaatccattgcaggaaccaactatgtagc |
190 |
Q |
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|| ||||||| || ||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
22088103 |
ccgctctatactcacttccgccgaataagcaaagcaatccattgcaggaaccaatgatgtagc |
22088041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 20338505 - 20338458
Alignment:
| Q |
57 |
taatttttctgatattatccttgtggctgggttccaaaaacgaagcca |
104 |
Q |
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||||||| | |||||| |||||||||| |||||||||||||||||||| |
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| T |
20338505 |
taattttgcagatattttccttgtggcagggttccaaaaacgaagcca |
20338458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 661187 - 661224
Alignment:
| Q |
67 |
gatattatccttgtggctgggttccaaaaacgaagcca |
104 |
Q |
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|||||| |||||||||| |||||||||||||||||||| |
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| T |
661187 |
gatattgtccttgtggccgggttccaaaaacgaagcca |
661224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 6865292 - 6865336
Alignment:
| Q |
60 |
tttttctgatattatccttgtggctgggttccaaaaacgaagcca |
104 |
Q |
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|||||| |||| | ||||| ||||||||||||||||||||||||| |
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| T |
6865292 |
tttttccgataatttccttatggctgggttccaaaaacgaagcca |
6865336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 29641937 - 29641902
Alignment:
| Q |
57 |
taatttttctgatattatccttgtggctgggttcca |
92 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
29641937 |
taatttttccgatattatccttgtggctgggttcca |
29641902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 23086176 - 23086148
Alignment:
| Q |
154 |
aagcaaagcaatccattgcaggaaccaac |
182 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23086176 |
aagcaaagcaatccattgcaggaaccaac |
23086148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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