View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_7 (Length: 412)
Name: NF9910_low_7
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 154 - 393
Target Start/End: Original strand, 22262774 - 22263017
Alignment:
| Q |
154 |
gtcctaaagcttataggaatgaaactagtccaacagaaacatcaaaacaacaaacaactaactgcaggtaagaaaaagtaaccaag----gagaagtcct |
249 |
Q |
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| T |
22262774 |
gtcctaaagcttataggaatgaaactagtccaacagaaacatcaactcaacaaacaactaactgcaggtaagaaaaagtaacctagctaggaggagtccg |
22262873 |
T |
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| Q |
250 |
gcatatatttgaaacaaatatcatacaataaaataaatatacaagcaagaatggaagataccgtttagtcacaaaataactaaagaaattaacaatatca |
349 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||| |
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| T |
22262874 |
gcatatatttgaaacaaatatcataccataaaataaatatacaagcaagaacggaagataccgtttagtcacaaaataactgaaaacattaacaatatca |
22262973 |
T |
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| Q |
350 |
ttttcatcattgttaagtgtaacacacatcatattcatcaaatc |
393 |
Q |
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|||| ||||| |||||||||||||| |||||||||||||||||| |
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| T |
22262974 |
tttttatcatcgttaagtgtaacacgcatcatattcatcaaatc |
22263017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 154 - 393
Target Start/End: Complemental strand, 22265725 - 22265482
Alignment:
| Q |
154 |
gtcctaaagcttataggaatgaaactagtccaacagaaacatcaaaacaacaaacaactaactgcaggtaagaaaaagtaaccaag----gagaagtcct |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| ||||| |
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| T |
22265725 |
gtcctaaagcttataggaatgaaactagtccaacagaaacatcaactcaacaaacaactaactgcaggtaagaaaaagtaacctagctaggaggagtccg |
22265626 |
T |
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| Q |
250 |
gcatatatttgaaacaaatatcatacaataaaataaatatacaagcaagaatggaagataccgtttagtcacaaaataactaaagaaattaacaatatca |
349 |
Q |
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| T |
22265625 |
gcatatatttgaaacaaatatcataccataaaataaatatacaagcaagaacggaagataccgtttagtcacaaaataactgaaaacattaacaatatca |
22265526 |
T |
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| Q |
350 |
ttttcatcattgttaagtgtaacacacatcatattcatcaaatc |
393 |
Q |
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| T |
22265525 |
tttttatcatcgttaagtgtaacacgcatcatattcatcaaatc |
22265482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 22262621 - 22262707
Alignment:
| Q |
1 |
atgcaattcaaagctccaaaactttagtttttagaggcaatgctccaaaacttaaaacctaaaacctccttctttggtctagtgaac |
87 |
Q |
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| T |
22262621 |
atgcaattcaaagctccaaaactttagtttttagaggcaatgctccaaaacttaaaacctaaaacctccttctttggtctagtgaac |
22262707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 22265878 - 22265792
Alignment:
| Q |
1 |
atgcaattcaaagctccaaaactttagtttttagaggcaatgctccaaaacttaaaacctaaaacctccttctttggtctagtgaac |
87 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22265878 |
atgcaattcaaagctccaaaactttagtttttagaggcaatgctccaaaacttaaaacctaaaacctccttctttggtctagtgaac |
22265792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 45873265 - 45873358
Alignment:
| Q |
202 |
aacaaacaactaactgcaggtaagaaa-aagtaaccaaggagaagtcctgcatatatttgaaacaaatatcatacaataaaataaatatacaag |
294 |
Q |
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|||||||| ||||||| |||||||||| ||| |||| | ||| | || |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45873265 |
aacaaacatctaactgaaggtaagaaacaagcaacctaagaggaatcttgcatatatttgaaacaaatattatacaataaaataaatatacaag |
45873358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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