View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9910_low_8 (Length: 405)
Name: NF9910_low_8
Description: NF9910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9910_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 37901743 - 37901498
Alignment:
| Q |
19 |
atacaccccaagcaccaaaaccaacaagcttgccacaatcatattcaccaataatttccccttcttaggccttgtgtcaccaaaaccaaaacctaattgg |
118 |
Q |
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| T |
37901743 |
atacaccccaagcaccaaaaccaacaagcttgccacaatcatattcaccaataacttccccttcttaggccttgtgtcaccaaaacc------taattgg |
37901650 |
T |
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| Q |
119 |
ttaacatccttatcatcctttgatctcaaacttatattaaaatctaaaatccttgttttcaatctttgtgtcatcttgccttgtctctttcccttaccct |
218 |
Q |
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| T |
37901649 |
ttaacatccttatcatcctttgatctcaaacttatattaaaatctaaaatccttgttttcaatctttgtgtcatcttgccttgtctctttcccttaccct |
37901550 |
T |
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| Q |
219 |
cactagttttaataacttcttttgtctccaacaactcatcattagtcctcac |
270 |
Q |
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| T |
37901549 |
cagcagttttaataacttcttttgtctccagcaactcatcattagtcctcac |
37901498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 37901416 - 37901373
Alignment:
| Q |
349 |
tgactcttgttgatcttcaaccacttgtgcttgtgttggtgcct |
392 |
Q |
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| T |
37901416 |
tgactcttgttgatcatcaaccacttgtgcttgtgttggtgcct |
37901373 |
T |
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