View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9911_high_2 (Length: 425)
Name: NF9911_high_2
Description: NF9911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9911_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 10309322 - 10308931
Alignment:
| Q |
19 |
cacagacagacaattcaggtaacttcatcagttatggttttgcattaatatatacgacataaaaaatgtcttaatgttaaggaaacttcttttgctctga |
118 |
Q |
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| T |
10309322 |
cacagacagacaattcaggtaacttcatcagttatggttttgcattaatatatacgacataaaaaatgtcttaatgttaaggaaacttcttttgctctga |
10309223 |
T |
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| Q |
119 |
tattacaattgacaagtaataaaattctggacttgttattcatcttaannnnnnnnncctt-cagtatatactgccacacgaacatgaaaagctctcgca |
217 |
Q |
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| T |
10309222 |
tattacaattgacaagtaataaaattctggactttttattcatcttatttttttttttttttcagtatatactgccacacgaacatgaaaagctctcaca |
10309123 |
T |
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| Q |
218 |
agttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtctttgcttggcccatatttggtcttcctgtcttctactgttaat |
317 |
Q |
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| T |
10309122 |
agttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtctttgcttggcccatatttggtcttcctgtcttctactgttaat |
10309023 |
T |
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| Q |
318 |
gggtatgaccattgtttgtttttgtgaaacattccatatatctccccatttaaaagagttaacatcgacattactgattgacggtaagaact |
409 |
Q |
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| T |
10309022 |
gggtatgaccattgtttgtttttgtgaaacattccatatatctccccatttaaaagagttaacatcgacattactgattgatggtaagaact |
10308931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 178 - 359
Target Start/End: Complemental strand, 38432172 - 38431990
Alignment:
| Q |
178 |
ttcagtatatactgccacacgaacatgaaaagctctcgcaagttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtcttt |
277 |
Q |
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| T |
38432172 |
ttcagtatatactgccacacgaacatgaaaagctttcgcaagttgaattattggttgttgatgaagcagctgctattccactgccgacagtgaagtcttt |
38432073 |
T |
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| Q |
278 |
gcttggcccatatttggtcttcctgtcttctactgttaatgggtatgaccattgtttg-tttttgtgaaacattccatatatc |
359 |
Q |
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| T |
38432072 |
gcttggcccatatctggtcttcctgtcttccactgttaatgggtatgactggtgtttgcttttggtgaaactttccatatatc |
38431990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 11191789 - 11191838
Alignment:
| Q |
205 |
aaaagctctcgcaagttgaactgttggtagttgatgaagctgccgctatt |
254 |
Q |
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| T |
11191789 |
aaaagctctcgcaagttgaattattggtcgttgatgaagctgctgctatt |
11191838 |
T |
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