View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9911_high_5 (Length: 237)
Name: NF9911_high_5
Description: NF9911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9911_high_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 44374197 - 44374419
Alignment:
| Q |
15 |
aatatcattacaattaatgtggatttgacttgttaagatcttcttactaatctctcgacgacattggagtccaagccaatcgagaagaatcataaacatc |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44374197 |
aatatcattacgattaatgtggatttgacttgttaagatctacttactaatctctcgacgacattggagtccaagccaatcgagaagaatcataaacatc |
44374296 |
T |
|
| Q |
115 |
tccaaagaagatgtatcctcctccttgtgcactcaaacagtgtccaacgacatttctcaccaaaccctgaccattcagttgtgatatcaagctggatttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44374297 |
tccaaagaagatgtatcctcctccttgtgcactcaaacagtgtccaacgacatttctcaccaaaccctgaccattcagttgtgatatcaagctggatttg |
44374396 |
T |
|
| Q |
215 |
cccctgccaaggccaagcattcc |
237 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44374397 |
cccctgccaaggccaagcattcc |
44374419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 237
Target Start/End: Original strand, 39497338 - 39497498
Alignment:
| Q |
77 |
attggagtccaagccaatcgagaagaatcataaacatctccaaagaagatgtatcctcctccttgtgcactcaaacagtgtccaacgacatttctcacca |
176 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| ||||||||| ||||||||||||||| | | || ||||| ||||| | ||||||| ||||| |
|
|
| T |
39497338 |
attggagtccaactcattcgagaagaatcataaacatttccaaagaaaatgtatcctcctcctcgcgagcttaaacaatgtcccatcacatttcgcacca |
39497437 |
T |
|
| Q |
177 |
aaccctgaccattcagttgtgatatcaagctggatttgcccctgccaaggccaagcattcc |
237 |
Q |
| |
|
||||||| | |||||| |||||||||||||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
39497438 |
aaccctggctattcagctgtgatatcaagctggcctttccccttccaagaccaagtattcc |
39497498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University