View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9911_low_1 (Length: 472)
Name: NF9911_low_1
Description: NF9911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9911_low_1 |
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| [»] chr4 (7 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 87 - 472
Target Start/End: Complemental strand, 38224828 - 38224436
Alignment:
| Q |
87 |
aactattccctgaggaacaaaatgcgagcggcatcgcttccgatgagattaacaagaccaacaggggaaaactcgtgaagaagaagatcaatatcagaag |
186 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38224828 |
aactattccctgaggaacaaaatgcaagcggcatcgcttccgacgagattaacaagaccaacaggggaaaactcgtgaagaggaagatcaatatcagaag |
38224729 |
T |
|
| Q |
187 |
aagctctaagctttgccatgaagtatg-------atttttctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctctatgtcttg |
279 |
Q |
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||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38224728 |
aagctctaagctttgccattaagtctgcacactgatttttctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttt |
38224629 |
T |
|
| Q |
280 |
gatgagaacaacatagatgtgataacactcaatgggaccatttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaa |
379 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
38224628 |
gatgagaacaacatagatgtgataacactcaatggggccatttataagattaacgcaaacaagataatcagagtagcaaacaagctttgtataacccaaa |
38224529 |
T |
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| Q |
380 |
tccttctccatgatcagattgtgatagataatagaaagctcagtcaacaagatgtcaaatgatcctgaaatgaaaccagagaaacccacaatg |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
38224528 |
tccttctccatgatcagattgtgatagataatagaaagctcagtcaacaagatgtcaaatgatcctggaatgaaaccagagaaacccgcaatg |
38224436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 239 - 464
Target Start/End: Complemental strand, 38945861 - 38945636
Alignment:
| Q |
239 |
accgttacgctggtatggtgaagcaattgctctatgtcttggatgagaacaacatagatgtgataacactcaatgggaccatttataagattaacgcaaa |
338 |
Q |
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||||||||| || |||||||||||||||||| |||||||||||||| |||||||||||| || || |||||| || ||||||||||||||| ||||| |
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| T |
38945861 |
accgttacgttgttatggtgaagcaattgctttatgtcttggatgaaaacaacatagatatggtacgtctcaatcgggtcatttataagattaatgcaaa |
38945762 |
T |
|
| Q |
339 |
caagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcagattgtgatagataatagaaagctcagtcaacaagatgtcaaa |
438 |
Q |
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||||| ||| |||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| ||| ||||||||| | ||||||||||||||| |
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| T |
38945761 |
caagagaatccgagtagcaaacaagctatgtataacccaaatccttcgccatgatcagaccgtgataaatagcagaaagctcggccaacaagatgtcaaa |
38945662 |
T |
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| Q |
439 |
tgatcctgaaatgaaaccagagaaac |
464 |
Q |
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| T |
38945661 |
tgatcctggaatgaaatcagagaaac |
38945636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 396
Target Start/End: Original strand, 10470105 - 10470281
Alignment:
| Q |
220 |
ctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctctatgtcttggatgagaacaacatagatgtgataacactcaatgggacca |
319 |
Q |
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||||||||||||||||||||||||| |||| || ||||||| ||| | ||| |||||||||||||| |||||||| || || | | | ||||||||| |
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| T |
10470105 |
ctctctaagagtgtgagaaaccgttggattggtttgttgaagcatttgttttatctcttggatgagaaccacatagatatggtatctcacgatgggacca |
10470204 |
T |
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| Q |
320 |
tttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcag |
396 |
Q |
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| T |
10470205 |
ttaataaggttgacgcaagcaagagaatcagaatagcaagcaagttttgcataactcaaatctttagccatgatcag |
10470281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 409
Target Start/End: Original strand, 5203964 - 5204153
Alignment:
| Q |
220 |
ctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctctatgtcttggatgagaacaacatagatgtgataacactcaatgggacca |
319 |
Q |
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||||||||||||||||||||||||||| || | || ||||||| ||| | ||||||||| |||| |||| ||||||| || | | ||||||||| ||| |
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| T |
5203964 |
ctctctaagagtgtgagaaaccgttacattgatttgttgaagcatttgttttatgtcttgtatgataacagcatagatatggaacctctcaatggggcca |
5204063 |
T |
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| Q |
320 |
tttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcagattgtgatagata |
409 |
Q |
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| T |
5204064 |
tatataaggttgatgcaagcaagagaatcagaatagcaagaaagttctgcatatcccaaatcctttgccatgatcagcccgtgatagata |
5204153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 46762948 - 46762898
Alignment:
| Q |
150 |
ggggaaaactcgtgaagaagaagatcaatatcagaagaagctctaagcttt |
200 |
Q |
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| T |
46762948 |
ggggaaaaatcatgaagaagaagctcaatatcagaagcagctctaagcttt |
46762898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 38224901 - 38224870
Alignment:
| Q |
6 |
gtttggagttgggaccacaatgctagtttttt |
37 |
Q |
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| T |
38224901 |
gtttggagttgggaccacaatgctagtttttt |
38224870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 327
Target Start/End: Original strand, 10484032 - 10484138
Alignment:
| Q |
221 |
tctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctctatgtcttggatgagaacaacatagatgtgataacactcaatgggaccat |
320 |
Q |
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||||||||||||||||||| ||| | || | || ||||||| | | | ||| |||||||||||||||||| |||| || || | |||||||||||||| |
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| T |
10484032 |
tctctaagagtgtgagaaattgttgcattgatttgttgaagcattggttttatctcttggatgagaacaacagagatatggtatctctcaatgggaccat |
10484131 |
T |
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| Q |
321 |
ttataag |
327 |
Q |
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| T |
10484132 |
taataag |
10484138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 212 - 472
Target Start/End: Original strand, 1928859 - 1929119
Alignment:
| Q |
212 |
tgatttttctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctctatgtcttggatgagaacaacatagatgtgataacactcaa |
311 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| || ||||||||| ||||| || ||||| |||||||||||||||||||||| | || | ||||| |
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| T |
1928859 |
tgatttctctctctaagagtgtgagaaatcgttacgttgttatggtgaaacaattactttatgttttggatgagaacaacatagatgaggtacctctcaa |
1928958 |
T |
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| Q |
312 |
tgggaccatttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcagattgtgatagataat |
411 |
Q |
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| T |
1928959 |
tagggtcatttataagattaatgcaaacaagagaatcagagtagcaaacaagctctgtataactcaaatccttctccatgatcagaccatgatagatagc |
1929058 |
T |
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| Q |
412 |
agaaagctcagtcaacaagatgtcaaatgatcctgaaatgaaaccagagaaacccacaatg |
472 |
Q |
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||||||||| | |||||||||||||||||||||| ||||||| |||||| |||||||||| |
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| T |
1929059 |
agaaagctcggccaacaagatgtcaaatgatcctagaatgaaatcagagatacccacaatg |
1929119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 381
Target Start/End: Original strand, 35060931 - 35061093
Alignment:
| Q |
219 |
tctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctctatgtcttggatgagaacaacatagatgtgataacactcaatgggacc |
318 |
Q |
| |
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|||||||||||||||||||||| ||||| |||| || ||||||| ||| | |||||||||||||||||||| ||||| || || | ||||||||||| |
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| T |
35060931 |
tctctctaagagtgtgagaaactgttacattggtttgttgaagcatttgttttatgtcttggatgagaacaatgtagatatggtacctttcaatgggacc |
35061030 |
T |
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| Q |
319 |
atttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatc |
381 |
Q |
| |
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||| ||||| || | |||| ||||| ||| ||| |||||| |||| | || ||||| |||||| |
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| T |
35061031 |
attaataaggttgatgcaagcaagagaatcagaatagcaagcaagttatgcataacccaaatc |
35061093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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