View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9911_low_13 (Length: 246)
Name: NF9911_low_13
Description: NF9911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9911_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 18305333 - 18305104
Alignment:
| Q |
1 |
gaagacacagtcacaatgattttgttaacatttaaaataacttaaaaggctcaggaaatacacttaatttcagataattatatttaaggatttcatcttg |
100 |
Q |
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| T |
18305333 |
gaagacacagtcacaatgattttgttaacatttaaaataactcaaaaggctcaggacatacacttaatttcagataattatatttaaggatttcatcttg |
18305234 |
T |
|
| Q |
101 |
tagctaatcaccccaaaaa-cagttgagttctaggcttctagctaatacacgctaaactttgatcatacgaaagcaatttaattgttaaaatatatctgt |
199 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18305233 |
aagctaatcaccccaaaaaacagttgagttctaggcttctagctaatacacgctaaactttgatcatacgaaagcaatccaattgttaaaatatatctgt |
18305134 |
T |
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| Q |
200 |
catacatatgttacaatcatttgatgtaag |
229 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
18305133 |
catacatatgttacaatcatttgatgtaag |
18305104 |
T |
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