View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9911_low_2 (Length: 452)
Name: NF9911_low_2
Description: NF9911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9911_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 13477388 - 13477133
Alignment:
| Q |
20 |
ctgttacactgccaacacaatgtctaatttctttctttgatacgtcccttttcaaccaaagattaactgcacctctctttacttttactttccattccat |
119 |
Q |
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| T |
13477388 |
ctgttacactgccaacacaatgtctaatttctttctttgatacgtcccttttcaaccaaagattaactgcacctctctttacttttactttccattccat |
13477289 |
T |
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| Q |
120 |
catcaaagcctctaacaaaaacctcacacgtgtgatattcttttatatcctttaaataacatcattaactatttagcttttgttgattgcacttaagtta |
219 |
Q |
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| T |
13477288 |
catcaaagcctctaacaaaaacctcacacgtgtgatattcttttatattc-ttaaataacatcattaactatttagcttttgttgattgcacttaattga |
13477190 |
T |
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| Q |
220 |
tacgactaaatatattttaagaaaatatatggattcaatttgcaactgcaaacacgt |
276 |
Q |
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| T |
13477189 |
tatgactaaatatattttaagaaaatatatggattgaatttgtaactgcaaacacgt |
13477133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 290 - 442
Target Start/End: Complemental strand, 13476612 - 13476464
Alignment:
| Q |
290 |
accttaaatatactatgcattgttcataccaaccgaattaaactcgaagctcaactagcaaaccgtttatatttgaaatatttgaatgtgtaacataagt |
389 |
Q |
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| T |
13476612 |
accttaaatatactatgcattgtccataccagctgagttatactcgaaactca----gcaaaccgtttatatttgaaatatttgaatgtgtaacctaagt |
13476517 |
T |
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| Q |
390 |
cattcataataaatgtgggaatggcccacccaaatcaagatcacatacctttg |
442 |
Q |
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| T |
13476516 |
caatcatagtaaatgtgggcatggcccacccaaatcaagatcacatacctttg |
13476464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 685010 - 685050
Alignment:
| Q |
291 |
ccttaaatatactatgcattgttcataccaaccgaattaaa |
331 |
Q |
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| T |
685010 |
ccttacatataatatgcattgttcataccaactgaattaaa |
685050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 50380851 - 50380891
Alignment:
| Q |
290 |
accttaaatatactatgcattgttcataccaaccgaattaa |
330 |
Q |
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| T |
50380851 |
accttacatatattatgcattgttcataccaactgaattaa |
50380891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 32957558 - 32957602
Alignment:
| Q |
290 |
accttaaatatactatgcattgttcataccaaccgaattaaactc |
334 |
Q |
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| T |
32957558 |
accttacatatattatgcattgttcataccaaccgagctaaactc |
32957602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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