View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9911_low_3 (Length: 431)
Name: NF9911_low_3
Description: NF9911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9911_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 48961467 - 48961813
Alignment:
| Q |
1 |
tgctgatgaaggaaaaataaacaagaaagataagaataacaaaggaagaacaaaatcttcaattccaatggctgcatacatgaacagcaatgtacagtgt |
100 |
Q |
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| T |
48961467 |
tgctgatgaaggaaaaataaacaagaaagataagaataacaaaggaagaacaaaatcttcaattccaatggctgcatacatgaacagcaatgtacagtgt |
48961566 |
T |
|
| Q |
101 |
gtcaataactctctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagccatttggtgaaggctaccatgtga |
200 |
Q |
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| T |
48961567 |
gtcaataactctctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagccatttggtgaaggctaccatgtga |
48961666 |
T |
|
| Q |
201 |
aggaacatgttgatggtcgcaatatttgattcgaagatagtgtttgaattgattgtagttggttctttctgtttgtttctggcttataaaggtatatggg |
300 |
Q |
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| T |
48961667 |
aggaaaatgttgatggttgcaatatttgattcgaagatagtgtttgaattgattgtagttggttctttctgtttgtttctggcttataaaggtatatggg |
48961766 |
T |
|
| Q |
301 |
gaataaaggttgaagattctctccacttcatcattagtggaaaataaatg |
350 |
Q |
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| T |
48961767 |
gaataaaggttgaagattctctccact---tcattagtggaaaataaatg |
48961813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 48961835 - 48961906
Alignment:
| Q |
348 |
atgcatgcatatggatgcatgactttaactccaaccagatgctacctta--gttttctatgaaagatagata |
417 |
Q |
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| T |
48961835 |
atgcatgcatatggatgcatgactttaactccaaccaggtgctaccttagtgttttctatgaaagatagata |
48961906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 192
Target Start/End: Original strand, 9485931 - 9486046
Alignment:
| Q |
77 |
tacatgaacagcaatgtacagtgtgtcaataactctctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagc |
176 |
Q |
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|||||||| |||||||| |||||||| ||||| || | | | ||||||||||| |||| ||||||||||| |||| ||| | || |||||||||| |
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| T |
9485931 |
tacatgaatagcaatgtgcagtgtgtgaataattcattgttattacatgcttcttgtacccaccatgatccaggggtgcaacttacactttcaaagaagc |
9486030 |
T |
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| Q |
177 |
catttggtgaaggcta |
192 |
Q |
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| T |
9486031 |
catttggtaaaggcta |
9486046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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