View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9911_low_6 (Length: 394)
Name: NF9911_low_6
Description: NF9911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9911_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 26 - 383
Target Start/End: Complemental strand, 27561830 - 27561473
Alignment:
| Q |
26 |
gtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27561830 |
gtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtacgtttggatctcctcatttcttacaatattaaa |
27561731 |
T |
|
| Q |
126 |
cgtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaa |
225 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27561730 |
cgttttagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatcgaaa |
27561631 |
T |
|
| Q |
226 |
gatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgaatgggaaggttattcacacaaactgccctttcattttcttt |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
27561630 |
gatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgagtgggaaggttattcacacaaacttccctttcattttcttt |
27561531 |
T |
|
| Q |
326 |
ctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27561530 |
ctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
27561473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 36668711 - 36668348
Alignment:
| Q |
18 |
aaatcaaggtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttaca |
117 |
Q |
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|||||||| |||||||||||||| | |||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36668711 |
aaatcaagatggaagaggccaaacaagatattggtctgtgtatcatattttcattatttagatttgcagtgtgtatgtttggatctcctcatttcttaca |
36668612 |
T |
|
| Q |
118 |
atattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagc |
217 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36668611 |
atattaaatgtttcagggagaaaagatatcaaagctgagtttggtgtgatgtcttcagccttatctaaagaaatggggatgatggaaacacagttgaagc |
36668512 |
T |
|
| Q |
218 |
gatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcatt--cagcgaaattgaatgggaaggttattcacacaaactgcccttt |
315 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||| |||||||||||| | || |||||||| |||||||||||||||||||||||||| ||| |
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| T |
36668511 |
gatggaaagatgcagctcatgaagctgtatcattgcgtgcgaaagcacattcgctaagagagaaattgagtgggaaggttattcacacaaactgccattt |
36668412 |
T |
|
| Q |
316 |
cattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtc |
379 |
Q |
| |
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||||||||||||||||| ||||||||| |||||| |||||||| ||||||| |||||||||||| |
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|
| T |
36668411 |
cattttctttctcaccttctttgtgataggtcttttacagaaagttatctagataatttgagtc |
36668348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 31707919 - 31707837
Alignment:
| Q |
58 |
tatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaa |
140 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
31707919 |
tatcacattttctctatttagatttgtagtgtgtatgtttggatctcctcatttcttacaatattaaatgtttcaaggagaaa |
31707837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 36672640 - 36672887
Alignment:
| Q |
18 |
aaatcaaggtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttaca |
117 |
Q |
| |
|
|||| ||| ||||| |||||||| | |||| ||||||| ||||||| |||| ||||||||||| || ||||| |||||||| ||||||| ||||||||| |
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|
| T |
36672640 |
aaattaagatggaaaaggccaaacaagatattggtctgcatatcacattttatctatttagatatgaagtgtctatgtttgaatctcctagtttcttaca |
36672739 |
T |
|
| Q |
118 |
atattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgat-atcttcagctttatct-aaagaaatggggatgatggaaacacagttgaa |
215 |
Q |
| |
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|||| | |||| | |||||| | |||||||| |||||| |||||||| ||| | |||||||||| ||| |||| ||||||| ||| |||||||| |
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| T |
36672740 |
gtattgcatgtttaaaggagaataggtatcaaagttgagttacgtgtgatgatcat-agctttatctaaaaaaaattgggatgacagaagatcagttgaa |
36672838 |
T |
|
| Q |
216 |
gcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagca |
264 |
Q |
| |
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| |||||||||||| ||||||| ||| |||| ||||| ||||||||||| |
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| T |
36672839 |
gtgatggaaagatgtagctcttgaagttgtatcattgtgtgagaaagca |
36672887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 246
Target Start/End: Original strand, 27563307 - 27563519
Alignment:
| Q |
34 |
ggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcag |
133 |
Q |
| |
|
||||||| | ||| || ||||| ||||||| |||| | ||||||||| | |||||||||||||| |||| || |||||||| ||||| | ||||||| |
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| T |
27563307 |
ggccaaacaagatgctagtctgcatatcacattttttgtatttagatgtctagtgtgtatgtttgaatcttctagtttcttaccatattgcatgtttcag |
27563406 |
T |
|
| Q |
134 |
ggagaaatgatatcaaagctgagtttcgtgtgat-atcttcagctttatctaaagaaat-ggggatgatggaaacacagttgaagcgatggaaagatgca |
231 |
Q |
| |
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||||| | |||||| || |||||| ||||||| ||||| ||||||||||||| |||| ||||||||||||| ||||||||| ||| ||| |||||| |
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| T |
27563407 |
ggagagaagatatc-aacttgagttatgtgtgatgatctt-agctttatctaaaaaaatcggggatgatggaagagcagttgaagtgatagaaggatgca |
27563504 |
T |
|
| Q |
232 |
gctcttaaagctgta |
246 |
Q |
| |
|
|||||| ||| |||| |
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| T |
27563505 |
gctcttgaagttgta |
27563519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 27 - 383
Target Start/End: Complemental strand, 29411234 - 29410876
Alignment:
| Q |
27 |
tggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaac |
126 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||| |||||||||||||||| |||| ||||||||| | ||||| |
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|
| T |
29411234 |
tggaagaggccaaacaggatactggtctgcgtagcacattttctctatttatatttgcactgtgtatgtttggatcccctcgtttcttacactgttaaat |
29411135 |
T |
|
| Q |
127 |
gtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaag |
226 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |
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|
| T |
29411134 |
ttttcagggagaaaagacatcaaagccgagtttcgtgtgatggcttcagctttatctaaagaaatggggatgatggacgcgcaggtgaagcgatggaaag |
29411035 |
T |
|
| Q |
227 |
atgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcg--aaattgaatgggaaggttattcacacaaactgccctttcattttctt |
324 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||| |||||| | || | ||||||| ||| |||||||||| || ||| | ||||||||||||||| |
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|
| T |
29411034 |
atgcagctcttgaagctgtatcattacgtgagaaagcgcattcactaagagaaaaattgagtggaaaggttattcgcataaagtaccctttcattttctt |
29410935 |
T |
|
| Q |
325 |
tctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
383 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||| |||| ||||||||||| |||| |
|
|
| T |
29410934 |
tctcgcctactttgtgataagtcttttacagaaattcatcttgataatttgagtttgtg |
29410876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 66 - 382
Target Start/End: Original strand, 24202401 - 24202719
Alignment:
| Q |
66 |
tttctctatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtg |
165 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||| ||| |||||||||| |||||||||||| |
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|
| T |
24202401 |
tttctctatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggacaaaagatatcaaagttgagtttcgtgtt |
24202500 |
T |
|
| Q |
166 |
atatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcac |
265 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||| |||| ||| | |||||||||||||||| |
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|
| T |
24202501 |
atggcttcaactttatctaaagaaatgggaatgatggatgcacagttgaagcgatgagaagatgcagcacttgaagccgtatccttgcgtgagaaagcac |
24202600 |
T |
|
| Q |
266 |
attcatt--cagcgaaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttat |
363 |
Q |
| |
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||||| | ||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||| |
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| T |
24202601 |
attcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttgtcaccgactttgtgataggtcttttacagcaatttat |
24202700 |
T |
|
| Q |
364 |
ctaaataatttgagtctgt |
382 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
24202701 |
ctagataatttgagtctgt |
24202719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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