View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9911_low_7 (Length: 375)
Name: NF9911_low_7
Description: NF9911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9911_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 44960970 - 44961264
Alignment:
| Q |
15 |
aaatagttgatagtccttgtgtgttattaaatgtgtatatacagttcatgttctgaaaaaactaggtgagtttttcaaattttgtcactttcctattgaa |
114 |
Q |
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| T |
44960970 |
aaatagttgatagtccttgtgtgttattaaatgtgtatatacagttcatgttctgaaaaaactaggtgagtttttcacattttgtcactttcctattgaa |
44961069 |
T |
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| Q |
115 |
gaagttttggggctattcttggtgaacactgacggtgtag-gtgagttatgcacttcatacaattcattgcttgcatctttaaagtcatttcatatttcc |
213 |
Q |
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| T |
44961070 |
gaagttttggggctattcttgctgaacactgacggtgtagtgtgagttatgcacttcatacaattcattgcttgtatctttaaagtcatttcatattccc |
44961169 |
T |
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| Q |
214 |
cttaaaatttgttgtaggatggaataatttcctttccttatttgattgaattttagcttataccgcacaaacataaatttagcttatactgtgat |
308 |
Q |
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| T |
44961170 |
cttaaaatttgttgtaggatggaataatttcctttccttatttgattgaattttagcttataccgcacaaacataaatttagcttatactgtgat |
44961264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 44961290 - 44961336
Alignment:
| Q |
327 |
tcaaacactcaaactaagagaaactcatgaaactccctctctgctcc |
373 |
Q |
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| T |
44961290 |
tcaaacactcaaactaagagaaactcatgaaactccctcactgctcc |
44961336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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