View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9912_high_1 (Length: 581)

Name: NF9912_high_1
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9912_high_1
NF9912_high_1
[»] chr8 (18 HSPs)
chr8 (26-565)||(23232126-23232665)
chr8 (78-447)||(28374519-28374886)
chr8 (78-431)||(11648708-11649060)
chr8 (79-356)||(9382180-9382459)
chr8 (78-419)||(24190303-24190641)
chr8 (89-447)||(32073041-32073399)
chr8 (139-351)||(45117343-45117555)
chr8 (78-247)||(9137515-9137680)
chr8 (25-84)||(11648612-11648671)
chr8 (109-247)||(28509232-28509370)
chr8 (139-351)||(3762574-3762786)
chr8 (183-351)||(7263691-7263859)
chr8 (296-344)||(39906110-39906157)
chr8 (362-428)||(44149483-44149549)
chr8 (302-351)||(1981470-1981518)
chr8 (300-344)||(4432248-4432291)
chr8 (362-414)||(9137359-9137411)
chr8 (270-386)||(35824019-35824133)
[»] chr2 (37 HSPs)
chr2 (86-454)||(19091145-19091513)
chr2 (78-376)||(13597829-13598124)
chr2 (78-433)||(30386647-30387003)
chr2 (87-351)||(38566167-38566425)
chr2 (199-447)||(31549160-31549407)
chr2 (78-247)||(9057381-9057548)
chr2 (285-458)||(21573758-21573931)
chr2 (79-319)||(14903932-14904173)
chr2 (81-458)||(11199242-11199616)
chr2 (283-433)||(25621105-25621255)
chr2 (86-402)||(6882826-6883142)
chr2 (102-454)||(24484250-24484598)
chr2 (78-414)||(41302404-41302732)
chr2 (78-411)||(10022732-10023060)
chr2 (275-412)||(25424445-25424581)
chr2 (139-247)||(33054754-33054862)
chr2 (109-247)||(7880344-7880482)
chr2 (103-309)||(38422915-38423122)
chr2 (108-222)||(29303173-29303287)
chr2 (25-79)||(31549021-31549075)
chr2 (79-166)||(41422808-41422891)
chr2 (78-123)||(31549117-31549162)
chr2 (108-247)||(19678000-19678139)
chr2 (78-166)||(25621500-25621588)
chr2 (330-409)||(41423066-41423145)
chr2 (139-351)||(6221262-6221475)
chr2 (25-79)||(13597733-13597787)
chr2 (264-343)||(19685679-19685757)
chr2 (264-351)||(33015333-33015420)
chr2 (264-351)||(44314181-44314268)
chr2 (264-351)||(44322360-44322447)
chr2 (296-351)||(2553933-2553987)
chr2 (287-430)||(9057201-9057341)
chr2 (176-247)||(41422927-41422998)
chr2 (296-351)||(41826137-41826191)
chr2 (366-454)||(14903810-14903897)
chr2 (28-72)||(38422799-38422843)
[»] chr7 (28 HSPs)
chr7 (78-454)||(5770652-5771016)
chr7 (78-454)||(43179379-43179753)
chr7 (264-454)||(8114052-8114241)
chr7 (78-240)||(40934037-40934198)
chr7 (80-344)||(39038847-39039110)
chr7 (78-412)||(9420272-9420605)
chr7 (82-248)||(35118206-35118368)
chr7 (87-220)||(28460206-28460338)
chr7 (273-433)||(44733322-44733480)
chr7 (86-246)||(21863581-21863741)
chr7 (99-245)||(44733619-44733763)
chr7 (109-247)||(48636674-48636812)
chr7 (87-165)||(45446031-45446109)
chr7 (79-164)||(8604552-8604637)
chr7 (139-351)||(8389314-8389526)
chr7 (137-360)||(24441940-24442163)
chr7 (273-376)||(28460379-28460482)
chr7 (138-240)||(41822149-41822251)
chr7 (79-222)||(8113870-8114011)
chr7 (138-243)||(29636905-29637010)
chr7 (264-351)||(8604733-8604819)
chr7 (108-247)||(6189387-6189526)
chr7 (108-166)||(8069633-8069691)
chr7 (183-351)||(35478036-35478204)
chr7 (296-351)||(13753992-13754046)
chr7 (176-351)||(20394837-20395012)
chr7 (108-166)||(48238512-48238570)
chr7 (264-344)||(4539750-4539830)
[»] chr5 (27 HSPs)
chr5 (78-479)||(8806273-8806671)
chr5 (78-433)||(3654464-3654821)
chr5 (78-473)||(38915669-38916063)
chr5 (78-414)||(5121142-5121482)
chr5 (78-247)||(6769319-6769483)
chr5 (99-351)||(29149528-29149781)
chr5 (99-414)||(13820844-13821157)
chr5 (270-433)||(16686829-16686990)
chr5 (99-433)||(16040161-16040492)
chr5 (273-412)||(33922441-33922580)
chr5 (78-247)||(29789526-29789695)
chr5 (332-433)||(26401720-26401821)
chr5 (176-406)||(2676788-2677017)
chr5 (86-247)||(13826180-13826343)
chr5 (109-247)||(38491018-38491156)
chr5 (331-433)||(29789159-29789261)
chr5 (78-215)||(37134741-37134878)
chr5 (139-351)||(23962727-23962939)
chr5 (79-240)||(43171359-43171515)
chr5 (108-247)||(7850286-7850425)
chr5 (270-413)||(37134603-37134745)
chr5 (25-79)||(8806177-8806231)
chr5 (391-447)||(43171660-43171715)
chr5 (33-79)||(16040056-16040102)
chr5 (273-351)||(18888945-18889022)
chr5 (26-79)||(38915574-38915627)
chr5 (78-146)||(20891348-20891416)
[»] chr6 (16 HSPs)
chr6 (81-419)||(11680814-11681153)
chr6 (87-431)||(26817160-26817497)
chr6 (68-447)||(19107720-19108092)
chr6 (293-433)||(15059965-15060101)
chr6 (264-414)||(1131588-1131737)
chr6 (176-406)||(1603193-1603422)
chr6 (78-219)||(3229155-3229292)
chr6 (87-154)||(13758742-13758810)
chr6 (109-222)||(33516611-33516724)
chr6 (264-351)||(22012254-22012341)
chr6 (375-454)||(1213047-1213126)
chr6 (78-239)||(31129734-31129890)
chr6 (273-310)||(30358798-30358835)
chr6 (273-310)||(30359615-30359652)
chr6 (139-222)||(1422961-1423044)
chr6 (273-313)||(3229341-3229381)
[»] chr4 (30 HSPs)
chr4 (78-433)||(52458813-52459166)
chr4 (78-433)||(52460070-52460423)
chr4 (79-411)||(10141960-10142292)
chr4 (78-430)||(29282965-29283313)
chr4 (78-472)||(1843116-1843504)
chr4 (273-447)||(51758232-51758406)
chr4 (274-447)||(25200811-25200984)
chr4 (87-222)||(42512194-42512329)
chr4 (78-216)||(21320025-21320162)
chr4 (78-414)||(9921809-9922138)
chr4 (98-247)||(13957231-13957380)
chr4 (78-240)||(41509148-41509309)
chr4 (78-426)||(10373325-10373672)
chr4 (176-406)||(7413795-7414024)
chr4 (176-406)||(7459876-7460105)
chr4 (332-428)||(51891001-51891097)
chr4 (108-222)||(51337648-51337762)
chr4 (273-351)||(22594154-22594232)
chr4 (80-203)||(24611307-24611430)
chr4 (99-166)||(51890407-51890474)
chr4 (99-166)||(51890681-51890748)
chr4 (112-205)||(3665451-3665544)
chr4 (139-351)||(10095037-10095249)
chr4 (78-127)||(25201111-25201160)
chr4 (35-79)||(52459208-52459252)
chr4 (35-79)||(52460465-52460509)
chr4 (330-454)||(55520233-55520355)
chr4 (25-74)||(6830674-6830723)
chr4 (328-413)||(20152554-20152638)
chr4 (183-240)||(23935836-23935893)
[»] chr1 (24 HSPs)
chr1 (86-414)||(12027600-12027929)
chr1 (78-220)||(24185619-24185760)
chr1 (280-433)||(47397688-47397841)
chr1 (78-222)||(5509809-5509953)
chr1 (78-216)||(47559506-47559642)
chr1 (109-247)||(36296674-36296812)
chr1 (87-220)||(5209643-5209776)
chr1 (109-247)||(42722209-42722347)
chr1 (139-351)||(17967339-17967551)
chr1 (136-414)||(25094980-25095257)
chr1 (88-239)||(41665592-41665742)
chr1 (136-222)||(49229349-49229435)
chr1 (78-239)||(9023202-9023363)
chr1 (33-79)||(44310579-44310625)
chr1 (150-244)||(48646138-48646232)
chr1 (285-433)||(12784130-12784278)
chr1 (139-343)||(34307461-34307665)
chr1 (87-247)||(47397490-47397650)
chr1 (209-351)||(22070380-22070522)
chr1 (25-79)||(24185523-24185577)
chr1 (392-433)||(48645951-48645992)
chr1 (264-343)||(5049340-5049419)
chr1 (264-343)||(21906264-21906343)
chr1 (264-343)||(48999290-48999367)
[»] chr3 (26 HSPs)
chr3 (78-473)||(1424457-1424843)
chr3 (87-386)||(47184807-47185106)
chr3 (102-430)||(10993054-10993375)
chr3 (78-247)||(29713787-29713952)
chr3 (78-222)||(30191123-30191267)
chr3 (87-447)||(12892831-12893191)
chr3 (78-433)||(1698215-1698569)
chr3 (86-314)||(53472036-53472263)
chr3 (78-247)||(16876830-16876996)
chr3 (87-246)||(44663291-44663446)
chr3 (78-222)||(11639946-11640090)
chr3 (280-490)||(17147001-17147202)
chr3 (139-351)||(10994164-10994376)
chr3 (139-351)||(19156970-19157182)
chr3 (108-222)||(23044880-23044994)
chr3 (149-222)||(17147224-17147296)
chr3 (78-247)||(40145447-40145613)
chr3 (108-247)||(31884940-31885079)
chr3 (25-79)||(11830348-11830402)
chr3 (264-351)||(25071520-25071607)
chr3 (264-343)||(53077107-53077186)
chr3 (273-351)||(15760736-15760813)
chr3 (273-402)||(16877025-16877151)
chr3 (25-79)||(30191027-30191081)
chr3 (87-127)||(4127624-4127664)
chr3 (365-429)||(11640231-11640295)
[»] scaffold0178 (1 HSPs)
scaffold0178 (82-319)||(2387-2624)
[»] scaffold0263 (1 HSPs)
scaffold0263 (78-247)||(18553-18722)
[»] scaffold1266 (1 HSPs)
scaffold1266 (78-247)||(1294-1463)
[»] scaffold0002 (3 HSPs)
scaffold0002 (78-165)||(98304-98391)
scaffold0002 (197-246)||(119420-119469)
scaffold0002 (294-349)||(119516-119572)
[»] scaffold0116 (2 HSPs)
scaffold0116 (102-248)||(40796-40938)
scaffold0116 (280-351)||(40693-40764)
[»] scaffold0160 (1 HSPs)
scaffold0160 (78-247)||(25099-25268)
[»] scaffold0743 (1 HSPs)
scaffold0743 (108-222)||(3287-3401)
[»] scaffold0229 (1 HSPs)
scaffold0229 (375-454)||(14210-14289)
[»] scaffold0016 (1 HSPs)
scaffold0016 (273-344)||(87782-87852)
[»] scaffold0552 (1 HSPs)
scaffold0552 (26-74)||(10176-10224)


Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 26 - 565
Target Start/End: Original strand, 23232126 - 23232665
Alignment:
Q  26 atgatcctgaatgtgtttcacatgattctgcattatcaaattcaattttgcaataatttaattttttggaacatttgaaagacaagattaaaattaattt 125  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23232126 atgatcatgaatgtgtttcacatgattctgcattatcaaattcaattttgcaataatttaattttttggaacatttgaaagaaaagattaaaattaattt 23232225  T
Q  126 cttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcctaatttcttcaataataaatatcactaatatttttaatattggc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23232226 cttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcctaatttcttcaataataaatatcaccaatatttttaatattggc 23232325  T
Q  226 gaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaatttttcgatgataaattttttgacacattattaagaacaaccaaatttttctatat 325  Q
    |||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23232326 gaggcacaatattagaaacaaagggctcaaaaaaataccaccaatttttcgatgataaattttttgacacattattaagaacaaccaaatttttctatat 23232425  T
Q  326 gaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcat 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23232426 gaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcat 23232525  T
Q  426 catgtcaactttttgggcctttaagtgaattttttctatatacacccctccaaaaaacaaaatatgcatagggttggccctgaatatatactagcacttg 525  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23232526 catgtcaactttttggacctttaagtgaattttttctatatacacccctccaaaaaacaaaatatgcatagggttggccctgaatatatactagcacttg 23232625  T
Q  526 gcgttaaattataggatataaggggtgtcaacctagttaa 565  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  23232626 gcgttgaattataggatataaggggtgtcaacctagttaa 23232665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 78 - 447
Target Start/End: Original strand, 28374519 - 28374886
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    ||||||||||||||| |||||||| ||| |||||||||| ||||||||||  ||||  ||||||||||| |||||||||||||| |||||||||||| ||    
T  28374519 ataatttaatttttttgaacatttaaaaaacaagattaagattaatttctctagtaaactcattttcaactaaaatataattta-tttggttataaaatt 28374617  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    || | |||||||| ||||||||||||||| |||||||||||||||   ||| |||| | |||| |||||| | | |       || ||||||||| | |     
T  28374618 attcaaatttcttgaataataaatatcac-aatatttttaatattaatgagacacattcttagcaacaaaggacccaacaaaatatcaccaatttctaca 28374716  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    |||||  || |||||||||||||||||| ||||||||| |||| |||| | ||| || ||||| |||||||||||  | ||||| |||||||||| ||||    
T  28374717 atgat-gatattttgacacattattaagtacaaccaaaattttttataaggaggatggatata-aaatctttgtgctaaacgggggtatatatagcaaat 28374814  T
Q  377 cacg-ccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggccttt 447  Q
    ||||   ||||||||||||||||||||||| |||||||| || | ||||| || ||||  ||| ||||||||    
T  28374815 cacgaaaaaaagggtcaaaaacattaacaggcttcagcccaaaccttcataatttcaatatttggggccttt 28374886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 78 - 431
Target Start/End: Original strand, 11648708 - 11649060
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    ||||||||||| |||||||| |||||||||||||||| | ||||||||||  | |  |  ||||||||| ||||||||||||| ||||| ||||||| ||    
T  11648708 ataatttaattatttggaacctttgaaagacaagattgagattaatttctctaatgagtccattttcaactaaaatataatttgttttg-ttataaaatt 11648806  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaatttt-tcg 276  Q
    |||  ||||||||  |||||||||||||| ||||||||||||||| | |||||||| |||||| |||||| || ||       || |||||||||| |||    
T  11648807 atctcaatttctttgataataaatatcaccaatatttttaatattagtgaggcacattattaggaacaaatgg-tccaaaaaatatcaccaattttatcg 11648905  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    || ||||| |||||  ||||||||||||||||||||| ||||| |||| | | ||||||||||| |||  ||||| ||||  || |||||||||||  ||    
T  11648906 ataataaaatttttagcacattattaagaacaaccaattttttttatagggatggtgtatatag-aattattgtggaatataggggtatatatagagtat 11649004  T
Q  377 cacgccaaaagg-gtcaaaaacattaacagacttcagcctaacctttcatcatgtc 431  Q
    | | ||||||||    ||||||||||||||||||||||  | ||||||||||||||    
T  11649005 cgccccaaaaggccaaaaaaacattaacagacttcagctcagcctttcatcatgtc 11649060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 79 - 356
Target Start/End: Original strand, 9382180 - 9382459
Alignment:
Q  79 taatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagtt 177  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |  | ||||  ||||||||| ||||||||||||| |||| ||||| ||| ||    
T  9382180 taatttaattttttggaacctttgaaagaaaagattaaaattaatttttctaataggtccattttcaactaaaatataatttgtttt-gttatgaaaatt 9382278  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||| ||||  ||  ||| |||||||||| ||||||||||||||| | || ||||| |||||| || ||| ||  |       || ||||||||| || |    
T  9382279 atcccaattcattagatagtaaatatcaccaatatttttaatattagtgaagcacattattaggaataaagggagcaaaaaaatatcaccaatttcttgg 9382378  T
Q  277 atgataaattttttgacacattattaagaacaac--caaatttttctatatgaagggtgtatatagaaatctttgtgaaata 356  Q
    || || ||||||||  ||||||||||||||||||  | ||||||| |||| | ||||||| |||||||||||||||| ||||    
T  9382379 ataat-aattttttagcacattattaagaacaacaaccaatttttttatagggagggtgtgtatagaaatctttgtgcaata 9382459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 78 - 419
Target Start/End: Original strand, 24190303 - 24190641
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||| |||  | ||||||||| ||||| ||||| |||    |||| ||||||||||| ||||||||||||| |||| ||||| ||| |    
T  24190303 ataatttatttttttgaaaccatagaaagacaaaattaagattaacttc----gtagactcattttcaactaaaatataatttgtttt-gttataaaaat 24190397  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattttt-c 275  Q
    ||||| ||||||||  |||||||||||||  |||||||||||||||   |||||| |||||||  ||||||  || |       || | ||||||||| |    
T  24190398 tatcccaatttcttggataataaatatcatcaatatttttaatattactgaggcataatattatgaacaaagagcccaaaaaaatatctccaatttttcc 24190497  T
Q  276 gatgataaattttttgacacattattaagaacaaccaaa--tttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaa 373  Q
     ||||||||||||||| |||||||||||||| || ||||  ||||| |||| | | ||||||||||||||||  |||| |||||| | |||||||||| |    
T  24190498 catgataaattttttggcacattattaagaaaaatcaaacttttttttatagggaaggtgtatatagaaatc--tgtgtaatacgagggtatatatagca 24190595  T
Q  374 aatcacgccaaaagggtcaaaaacattaacagacttcagcctaacc 419  Q
    |||| ||| |||| |  | | ||||||||||||||| |||| ||||    
T  24190596 aatctcgctaaaatgacctataacattaacagacttgagcccaacc 24190641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 89 - 447
Target Start/End: Complemental strand, 32073399 - 32073041
Alignment:
Q  89 ttttggaacatttgaaagacaagattaaaattaatttcttcagtaggct--cattttcaattaaaatataatttattttggttataaag-ttatcctaat 185  Q
    ||||||||| |||||| ||||||||||| ||||||||||  | || |    ||||||||| ||||||||||||  ||||| ||  |||| |||||  |||    
T  32073399 ttttggaacctttgaacgacaagattaagattaatttctctaatatgtgtccattttcaactaaaatataattcgttttg-ttgcaaagattatcacaat 32073301  T
Q  186 ttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaa 284  Q
    |||||  |||||||||||||| ||||||||||||||| | ||| |||| ||||||||| ||| |||||       || ||| ||||| || ||| ||||     
T  32073300 ttcttggataataaatatcaccaatatttttaatattagtgagacacattattagaaa-aaagggctcaaaaaa-tatcacaaatttcttggataataa- 32073204  T
Q  285 ttttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaa 384  Q
    ||||||| ||| |||||||||||| | |||      |||||   |||| ||||| ||||| ||||||  ||||||| ||||||||||||||||||| |||    
T  32073203 ttttttggcacgttattaagaacacctaaaaaaaattatattgggggtatatattgaaatatttgtgttatacgggggtatatatagaaaatcacgtcaa 32073104  T
Q  385 aagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggccttt 447  Q
    ||  | |||||||| ||||| ||||||||  |||| |||||||||||||||||| ||| ||||    
T  32073103 aaatgccaaaaacaataacaaacttcagctcaacccttcatcatgtcaacttttcgggtcttt 32073041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 351
Target Start/End: Complemental strand, 45117555 - 45117343
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    |||||||| |||||||||||||  |||| |||| ||| |||||| ||||||||  ||||||||||||    |||||||||||||| |||| ||||| |||    
T  45117555 attttcaactaaaatataatttgctttg-ttatgaaaattatcccaatttcttggataataaatatcgtcgatatttttaatattagcgaagcacattat 45117457  T
Q  238 tagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtat 336  Q
    ||| |||||| ||| |       || ||||||||| |||||| ||||||||||   || ||||| |||||||||||||| ||| |||| | |||||||||    
T  45117456 taggaacaaagggcccaaaaaaatatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatatttttata-ggagggtgtat 45117358  T
Q  337 atagaaatctttgtg 351  Q
    |||||||| ||||||    
T  45117357 atagaaatttttgtg 45117343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 9137680 - 9137515
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||| | |||||| |||| || ||||||||||||||| ||||||     || ||||||||||||||| ||||||||||||| ||||| |||| ||| |    
T  9137680 ataattaattttttttgaaccttagaaagacaagattaagattaata----ca-taggctcattttcaactaaaatataatttgttttg-ttatgaaaat 9137587  T
Q  177 tatcct-aatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
    |||||  ||||||||  |||||||||||||| ||||||||||||||| | ||| |||| |||||| ||||||    
T  9137586 tatccacaatttcttggataataaatatcaccaatatttttaatattagtgagacacattattaggaacaaa 9137515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 11648612 - 11648671
Alignment:
Q  25 catgatcctgaatgtgtttcacatgattctgcattatcaaattcaattttgcaataattt 84  Q
    ||||||| ||||||||| || ||||||| |||||||||||||||||||||||||| ||||    
T  11648612 catgatcatgaatgtgtctcgcatgattttgcattatcaaattcaattttgcaatcattt 11648671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 28509370 - 28509232
Alignment:
Q  109 aagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcact 207  Q
    |||||||| |||||||| |  ||||||| ||||||||| ||||||||||||| |||| ||||| ||| || |||||||||  |  ||||||||||||||     
T  28509370 aagattaagattaatttttctagtaggcccattttcaactaaaatataatttgtttt-gttatgaaaattctcctaattttctggataataaatatcaca 28509272  T
Q  208 aatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     |||||||||||||| |  || |||| |||||| ||||||    
T  28509271 tatatttttaatattagtaagacacattattaggaacaaa 28509232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 351
Target Start/End: Complemental strand, 3762786 - 3762574
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    |||||||| ||||||| |||||  |||| |||| ||| |||||| ||||||||  ||||||||||||    |||||||||||||| | ||  |||| |||    
T  3762786 attttcaactaaaatagaatttgctttg-ttatgaaaattatcccaatttcttggataataaatatcgtagatatttttaatattagtgaaacacattat 3762688  T
Q  238 tagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtat 336  Q
    ||| |||||| ||| |       || ||||||||| |||||| ||||||||||   || ||||| |||||||||||||||||| |||| | ||||||| |    
T  3762687 taggaacaaagggcccaaaaaaatatcaccaatttcttcgataataaatttttaagcatattatcaagaacaaccaaatttttttata-ggagggtgtgt 3762589  T
Q  337 atagaaatctttgtg 351  Q
    |||||||| ||||||    
T  3762588 atagaaatatttgtg 3762574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 351
Target Start/End: Original strand, 7263691 - 7263859
Alignment:
Q  183 aatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgat 281  Q
    ||||||||  ||||||||||||    |||||||||||||| |||| ||||| |||||  |||||| ||| |       || ||| ||||| |||||| ||    
T  7263691 aatttcttggataataaatatcgtcgatatttttaatattagcgaagcacattattaagaacaaagggcccaataaaatatcactaatttcttcgataat 7263790  T
Q  282 aaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||||   ||| |||||||||||||||||| ||||| |||| | ||||||||||||||||| ||||||    
T  7263791 aaattttcaaacatattattaagaacaaccaattttttttata-ggagggtgtatatagaaatttttgtg 7263859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 39906157 - 39906110
Alignment:
Q  296 attattaagaacaaccaaatttttctatatgaagggtgtatatagaaat 344  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||    
T  39906157 attattaagaacaaccaaatttttttatatg-agggggtatatagaaat 39906110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 44149483 - 44149549
Alignment:
Q  362 gtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcat 428  Q
    |||||||||| |||||  | |||||||||  ||||||||||||||||| |||| |||||| ||||||    
T  44149483 gtatatatagtaaatcttgtcaaaagggtataaaacattaacagacttgagcccaaccttccatcat 44149549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 1981518 - 1981470
Alignment:
Q  302 aagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||||||||||||||| |||| || |||||||||||||||| ||||||    
T  1981518 aagaacaaccaaatttttttatagga-gggtgtatatagaaatatttgtg 1981470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 4432248 - 4432291
Alignment:
Q  300 ttaagaacaaccaaatttttctatatgaagggtgtatatagaaat 344  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  4432248 ttaagaacaaccaaatttttttata-ggagggtgtatatagaaat 4432291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 9137411 - 9137359
Alignment:
Q  362 gtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcc 414  Q
    |||||||||| ||||| | ||||||||||  ||||||||||||||||| ||||    
T  9137411 gtatatatagtaaatctcaccaaaagggtttaaaacattaacagacttgagcc 9137359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 386
Target Start/End: Complemental strand, 35824133 - 35824019
Alignment:
Q  270 tttttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatat 369  Q
    ||||| ||| |||| | ||||| |||||||||||||||||||| | |||| |||| | | ||||||||| ||||| | ||||  ||| ||| ||||||||    
T  35824133 ttttttgataataattcttttggcacattattaagaacaaccaca-ttttgtatagggaaggtgtatatggaaatttgtgtgttataaggg-gtatatat 35824036  T
Q  370 agaaaatcacgccaaaa 386  Q
    || |||||| |||||||    
T  35824035 agcaaatcatgccaaaa 35824019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 1e-64; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 86 - 454
Target Start/End: Original strand, 19091145 - 19091513
Alignment:
Q  86 attttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaa 184  Q
    |||||||| ||| ||||||||| |||||||| ||||||||||  ||||||| ||||||||| ||||||||||||| ||||| |||| ||| |||| | ||    
T  19091145 attttttgaaacctttgaaagataagattaagattaatttctctagtaggcccattttcaactaaaatataatttgttttg-ttatgaaaattatacaaa 19091243  T
Q  185 tttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattttt-cgatgataa 283  Q
    ||||||  |||||||||||||| |||||||||||||||   |||||||| |||||| |||||| ||| |       || || |||||||| |||| ||||    
T  19091244 tttcttagataataaatatcaccaatatttttaatattattgaggcacattattaggaacaaagggcccaaaaaaatatcatcaattttttcgataataa 19091343  T
Q  284 attttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgcca 383  Q
    ||||||||||||||||||||||||||||||||||| |||||  || ||||||||||||||| ||||||  ||||||| |||||||||||||||   ||||    
T  19091344 attttttgacacattattaagaacaaccaaatttt-ctatagtaatggtgtatatagaaatatttgtgctatacgggggtatatatagaaaattgtgcca 19091442  T
Q  384 aaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaa 454  Q
    |||  | |||||| ||||||||||||||||| || | |||||||| ||||  |||  ||| ||||||||||    
T  19091443 aaatcgccaaaaatattaacagacttcagcccaatccttcatcatatcaatgtttgaggcgtttaagtgaa 19091513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 78 - 376
Target Start/End: Original strand, 13597829 - 13598124
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||| ||||||||||| | ||| || ||||||||||| ||||||||  | |||||| |||||||||| ||||||||||||| |||| |||||||| ||    
T  13597829 ataattaaattttttggatcctttaaatgacaagattaatattaatttgcttagtaggttcattttcaactaaaatataatttgtttt-gttataaaatt 13597927  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaatttttcga 277  Q
    |||| | ||||||  ||||||||||| || ||||||||||||||| |||||||||| |||||  |  ||||||| |       || ||||||||||||||    
T  13597928 atcccattttcttggataataaatatgaccaatatttttaatattagcgaggcacattattaagagtaaaaggcccaaaaaaatatcaccaatttttcga 13598027  T
Q  278 tgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    | |||||||||||| ||||||||||| |||||||| | | || |||| | ||||||||||||||||| ||||| | ||||||| || ||||||||||||    
T  13598028 taataaattttttggcacattattaaaaacaaccagagtcttttatagggagggtgtatatagaaatatttgt-atatacggg-gtgtatatagaaaat 13598124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 78 - 433
Target Start/End: Complemental strand, 30387003 - 30386647
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||| |  |||| || |||||| || ||||||||||||| |||| |||||||| ||    
T  30387003 ataatttaattttttggaacctttaaaagacaagattaagattaatttatctagtaagcccatttttaactaaaatataatttgtttt-gttataaaatt 30386905  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa-aggctcnnnnnnntaccaccaattt-ttc 275  Q
    |||||||||||||  ||||||||||||||  |||||||||||||| | ||| |||| |||||| |||||| || |         || ||| ||||| |||    
T  30386904 atcctaatttcttggataataaatatcaccgatatttttaatattagtgagacacattattaggaacaaatagtccaaaattaatatcacaaatttcttc 30386805  T
Q  276 gatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaa 375  Q
     || ||| || ||||| ||||||||||||||||||||||| ||| |||| | ||||||||||||||||  ||||||  | | ||  |||||||||  |||    
T  30386804 aataatatatattttggcacattattaagaacaaccaaatctttgtatagggagggtgtatatagaaaattttgtgctaaatggcggtatatataacaaa 30386705  T
Q  376 tcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    ||| || ||||||  ||||| ||||||||  |||||||| | || |||||||||||||    
T  30386704 tcatgcaaaaaggaccaaaaccattaacaagcttcagcccagccattcatcatgtcaa 30386647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 87 - 351
Target Start/End: Original strand, 38566167 - 38566425
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaat 185  Q
    ||||||| ||| || ||||||||||||||| |||||||||     |||||||| |||||| ||||||||||||| |||| ||||| ||| |||||| |||    
T  38566167 ttttttgaaaccttagaaagacaagattaagattaatttc----ctaggctca-tttcaactaaaatataatttgtttt-gttatgaaaattatcccaat 38566260  T
Q  186 ttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaa 284  Q
    |||||  |||||||||||||| ||||||||||||||| | || ||||| |||||| |||||| ||| |       || | | ||||| |||||| ||||     
T  38566261 ttcttggataataaatatcaccaatatttttaatattagtgacgcacattattaggaacaaatggcccaaaaaaatatcgctaatttcttcgataataat 38566360  T
Q  285 ttttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||||||||||||||||||| |||  ||||||| |||| | ||||||||||||||||||||||||    
T  38566361 ttttttgacacattattaagaaaaac--aatttttttatagggagggtgtatatagaaatctttgtg 38566425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 199 - 447
Target Start/End: Original strand, 31549160 - 31549407
Alignment:
Q  199 aatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacat 297  Q
    |||||||| ||||||||||||||| | |||||||| |||||| |||||| ||| |       || ||||||||| ||| || |||| ||||||| |||||    
T  31549160 aatatcaccaatatttttaatattagtgaggcacattattaggaacaaatggcccaaaaaaatatcaccaatttcttcaataataatttttttg-cacat 31549258  T
Q  298 tattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaac 397  Q
    |||||||||||||||||| ||| |||| |||||| | || ||||||||||||||| ||| ||| ||||||  |  |||||||| ||||||||  |||||     
T  31549259 tattaagaacaaccaaatgtttttataggaagggagcatgtagaaatctttgtgatatatgggggtatat-caacaaatcacgtcaaaagggcaaaaaat 31549357  T
Q  398 attaacagacttcagcctaacctttcatcatgtcaactttttgggccttt 447  Q
    ||||||||  ||||||| ||||||||||||||||||  ||| ||||||||    
T  31549358 attaacaggtttcagcccaacctttcatcatgtcaatgtttggggccttt 31549407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 9057548 - 9057381
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||||||||  ||||  || || ||||||||||||||||||| |||||  |||||| ||    
T  9057548 ataatttaattttttggaacctttgaaagacaatattaagattaatttctctagtaaacttatattcaattaaaatataatttgttttg--tataaaatt 9057451  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
    |||  ||||||||  ||||||||||| || ||||| |||||| || | |||||||| |||||||||||||    
T  9057450 atctcaatttcttggataataaatatgaccaatatatttaattttagtgaggcacattattagaaacaaa 9057381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 285 - 458
Target Start/End: Complemental strand, 21573931 - 21573758
Alignment:
Q  285 ttttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaa 384  Q
    ||||||| ||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||  ||||||| ||| |||||  ||||| | ||||    
T  21573931 ttttttggcacattattaagaacaaccaaatttttttacagggagggtgtatatagaaatctttgtgctatacgggggtacatataacaaatctccccaa 21573832  T
Q  385 aagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaatttt 458  Q
    |||||  |||||||| |||||| || |||| | || |||||||||||||  ||| ||| ||||| |||||||||    
T  21573831 aagggcaaaaaacataaacagattttagccaagcccttcatcatgtcaatatttggggtctttatgtgaatttt 21573758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 79 - 319
Target Start/End: Complemental strand, 14904173 - 14903932
Alignment:
Q  79 taatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagtt 177  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||||| |  ||||||   |||||||| ||||||||||||| |||| || || ||| ||    
T  14904173 taatttatttttttgtaacctttgaaagacaagattaaaattaatttttctagtaggtctattttcaactaaaatataatttgtttt-gtcatgaaaatt 14904075  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||||||||  ||  |||||||||||||| ||||||||||||||| | || ||||| |||||| || ||  ||| |       || ||| ||||| ||||    
T  14904074 atcctaattcattggataataaatatcacgaatatttttaatattagtgaagcacattattaggaataatgggcccaaaaaaatatcacaaatttcttcg 14903975  T
Q  277 atgataaattttttgacacattattaagaacaaccaaattttt 319  Q
    || |||| ||||||| ||||||||||||||||||||| |||||    
T  14903974 ataataatttttttggcacattattaagaacaaccaatttttt 14903932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 81 - 458
Target Start/End: Original strand, 11199242 - 11199616
Alignment:
Q  81 atttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttatc 180  Q
    ||||| ||||||| ||  ||||||| |||||||||| ||||||||||  |||| || ||||||||| ||||||| ||||| ||||| ||  ||| | |||    
T  11199242 atttatttttttgaaatctttgaaaaacaagattaagattaatttctctagtatgcccattttcaactaaaatagaatttgttttgctttgaaaatcatc 11199341  T
Q  181 ctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatg 279  Q
      ||||||||  |||||||||||||   ||||||||||||||   |||||||| |||||| |||||||||| |       || ||| ||||| ||||||     
T  11199342 tcaatttcttgcataataaatatcatcgatatttttaatattaatgaggcacattattaggaacaaaaggcccaaaaaaatatcactaatttcttcgata 11199441  T
Q  280 ataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcac 379  Q
    |||||||||||  || ||||||||||||||| |||      || | || | |||||||||||||| ||| ||  | | | | |||||||||||||||| |    
T  11199442 ataaattttttagcatattattaagaacaacaaaaaaaaa-tagagga-gagtgtatatagaaatatttatgctacatgtg-gtatatatagaaaatctc 11199538  T
Q  380 gccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaatttt 458  Q
    |  ||||||| |||||||| ||||||| |||||||||  |||| ||||||||||   ||||||||||| || |||||||    
T  11199539 gttaaaagggccaaaaacaataacagatttcagcctagtcttttatcatgtcaa-agtttgggcctttcagagaatttt 11199616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 283 - 433
Target Start/End: Complemental strand, 25621255 - 25621105
Alignment:
Q  283 aattttttgacacattattaagaacaaccaaat-ttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgc 381  Q
    |||||||||| |||||||||||||| | ||||| ||||||||||| |||||| |||||||||||| ||||  ||||||| ||| |||||| ||||| | |    
T  25621255 aattttttgatacattattaagaacgatcaaatattttctatatggagggtgaatatagaaatctctgtgctatacggg-gtacatatagcaaatcgcac 25621157  T
Q  382 caaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
     ||||||| |||| ||||||| ||| ||||||  | || |||||||||||||    
T  25621156 taaaagggccaaacacattaatagatttcagctcagccgttcatcatgtcaa 25621105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 86 - 402
Target Start/End: Complemental strand, 6883142 - 6882826
Alignment:
Q  86 attttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataa-tttattttggttat-aaagttatccta 183  Q
    |||||||||||| ||| ||| |||||||||| ||||||||||  |||||||   ||||||| |||||||||| ||| |||| ||||| ||| |||||  |    
T  6883142 attttttggaacctttaaaaaacaagattaagattaatttctcaagtaggcatgttttcaactaaaatataattttttttttgttatgaaaattatctca 6883043  T
Q  184 atttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgata 282  Q
    |||||||  ||||||| |||||| ||||||||||||||| | ||| |||| |||||  |||||| ||| |       || ||||||||| || ||| ||     
T  6883042 atttcttggataataagtatcaccaatatttttaatatttgtgagacacattattaagaacaaatggc-ccaaaaaatatcaccaatttctttgataat- 6882945  T
Q  283 aattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgcc 382  Q
    | ||||||| ||||||||||||||||||| ||||||| ||   | | ||||||| || |||||||||||  ||| | | ||||| |||| |||||  | |    
T  6882944 atttttttggcacattattaagaacaacc-aatttttttacggggatggtgtatgtaaaaatctttgtgctatatgtgggtatacatagcaaatcgtgtc 6882846  T
Q  383 aaaagggtcaaaaacattaa 402  Q
    ||||||| ||||||||||||    
T  6882845 aaaagggccaaaaacattaa 6882826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 102 - 454
Target Start/End: Complemental strand, 24484598 - 24484250
Alignment:
Q  102 gaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggt-tataaagttatcctaatttcttcaataataaa 200  Q
    ||||||||||||||| ||||||||     || | ||||||||||| ||||||||||||| ||||| | | |||| ||||   ||||||||  ||||||||    
T  24484598 gaaagacaagattaagattaatttt----gttgcctcattttcaactaaaatataatttgttttgttatgtaaa-ttatttcaatttcttggataataaa 24484504  T
Q  201 tatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaatttttcgatgataaattttttgacacattat 300  Q
    |||||| ||||||||||||||| |  ||||||| |||||| |||||||||| |         | |  ||  ||||||| |||| ||||||  | ||||||    
T  24484503 tatcacaaatatttttaatattagttaggcacattattaggaacaaaaggcccaaaaaacgtcaaaaaaaatttcgataataatttttttagcccattat 24484404  T
Q  301 taagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacatt 400  Q
    |||||| |||||| ||||| |||| | |||||| |||||||||  ||||||  |||     |||||||||| |||||   ||||||||| | ||| ||||    
T  24484403 taagaaaaaccaattttttttatagggagggtgcatatagaaacttttgtgttatagaacggtatatatagcaaatctgaccaaaagggcctaaatcatt 24484304  T
Q  401 aacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaa 454  Q
    |||||| || ||||   || |||||||| |||| ||| ||||||||| ||||||    
T  24484303 aacagattttagcccctcccttcatcatatcaattttctgggcctttcagtgaa 24484250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 414
Target Start/End: Original strand, 41302404 - 41302732
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttc-aattaaaatataatttattttggttat-aaag 175  Q
    |||||||| ||||||||||  || ||||||||||||||| || ||||||    |||||||||||||  || ||||||||||||| |||| ||||| |||     
T  41302404 ataatttatttttttggaatcttagaaagacaagattaagatcaatttc----gtaggctcatttttgaactaaaatataatttgtttt-gttatgaaaa 41302498  T
Q  176 ttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-tt 274  Q
    |||||| ||||| ||  |||||||||||||  ||||||| ||||||| | |||||||| |||||  |||||| ||| |       || | | ||||| ||    
T  41302499 ttatcccaattttttggataataaatatcaacaatatttgtaatattagtgaggcacattattacgaacaaagggc-cctaaaaatatcgcaaatttctt 41302597  T
Q  275 cgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaa 374  Q
    |||| |||||||||||| |||||||| ||||| || ||||||||| |||| | |||||   |||| |||||| |||   ||| | | |||||||||| ||    
T  41302598 cgataataaattttttggcacattataaagaaaaatcaaattttt-tatagggagggt---tataaaaatctctgt-ttatatgagggtatatatagcaa 41302692  T
Q  375 atcacgccaaaagggtcaaaaacattaacagacttcagcc 414  Q
    |||  |||||||||| | |||||||||||| |||| ||||    
T  41302693 atcttgccaaaagggcctaaaacattaacaaacttaagcc 41302732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 411
Target Start/End: Complemental strand, 10023060 - 10022732
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||  ||||||| ||| ||| ||||||| |||||| ||||||||||  ||||    || |||||| ||||||||| ||| ||||| |||| ||| |    
T  10023060 ataatttgtttttttgaaacctttaaaagacatgattaagattaatttctctagtaaaaccactttcaactaaaatatattttgttttg-ttatgaaaat 10022962  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttc 275  Q
    ||||  ||||||||  |||||||||||| | ||||||||| ||||| | |||||||| |||||| ||| || ||  |       || ||| ||||| |||    
T  10022961 tatctcaatttcttggataataaatatccccaatattttttatattagtgaggcacattattaggaac-aatggtcccaaaaaatatcactaatttattc 10022863  T
Q  276 gatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaa 375  Q
    ||| |||| |||||||||| |||| ||| ||||||||| |||||   || | ||| ||||||||||||   ||||||  ||| || |||  ||||| |||    
T  10022862 gataataatttttttgacatattaataataacaaccaatttttt---tagggaggatgtatatagaaa--attgtgatgtacaggggtaattatagcaaa 10022768  T
Q  376 tcacgccaaaagggtcaaaaacattaacagacttca 411  Q
    || | |||||| ||||||||||||||||||||||||    
T  10022767 tcgcaccaaaaaggtcaaaaacattaacagacttca 10022732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 412
Target Start/End: Original strand, 25424445 - 25424581
Alignment:
Q  275 cgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaa 374  Q
    |||| ||||| |||||| |||| ||||||||||||| || ||||| | ||  ||| |||||||||||||||| ||||  ||| ||| |||||||||| ||    
T  25424445 cgataataaaatttttggcacaatattaagaacaactaattttttttttaaaaagagtgtatatagaaatctgtgtgctata-gggggtatatatagcaa 25424543  T
Q  375 atcacgccaaaagggtcaaaaacattaacagacttcag 412  Q
     |   ||||||| || ||||||||||||||||||||||    
T  25424544 gttgtgccaaaaaggccaaaaacattaacagacttcag 25424581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 33054862 - 33054754
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    |||||||| ||||||||||||| ||||| |||| ||| ||||| |||||| ||  |||||||||||||| ||||||||||||||| | || ||||| |||    
T  33054862 attttcaactaaaatataatttgttttg-ttatgaaaattatcataatttattggataataaatatcaccaatatttttaatattagtgaagcacattat 33054764  T
Q  238 tagaaacaaa 247  Q
    ||| ||||||    
T  33054763 taggaacaaa 33054754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 7880344 - 7880482
Alignment:
Q  109 aagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcact 207  Q
    |||||||| ||||||||||  ||||||| ||||||||| ||||||||||||| |||| ||||| ||| || ||| |||||  |  ||||||||||||||     
T  7880344 aagattaagattaatttctctagtaggcccattttcaactaaaatataatttgtttt-gttatgaaaattctcccaattttctggataataaatatcaca 7880442  T
Q  208 aatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     |||||||||||||| |  || |||| |||||| ||||||    
T  7880443 tatatttttaatattagtaagacacattattaggaacaaa 7880482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 309
Target Start/End: Original strand, 38422915 - 38423122
Alignment:
Q  103 aaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaag-ttatcctaatttcttcaataataaat 201  Q
    ||||| |||||| | ||| ||||||  |||| |||||||||||| |||||||| |||| ||||| |||| ||| || ||  ||||||||  |||||||||    
T  38422915 aaagaaaagattgagatttatttctcaagtatgctcattttcaactaaaatatcatttgttttg-ttatgaagattctctcaatttcttggataataaat 38423013  T
Q  202 atcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattat 300  Q
    ||||  ||||||||||  ||| | |||||||| |||||| |||||| ||| |       || ||||||||| || |||||||||||| ||| ||||||||    
T  38423014 atcatcaatatttttataattagtgaggcacattattaggaacaaagggcccaaaaatatatcaccaatttcttggatgataaatttcttggcacattat 38423113  T
Q  301 taagaacaa 309  Q
    | |||||||    
T  38423114 ttagaacaa 38423122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 29303287 - 29303173
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcctaatttcttcaataataaatatcact 207  Q
    ||||||||| ||||||||||  ||||||| ||||||||| ||||||||||||| ||||| |  || | || ||| |||||  |  ||||||||||||||     
T  29303287 caagattaagattaatttctctagtaggcccattttcaactaaaatataatttgttttgttcttagaattctcccaattttctggataataaatatcaca 29303188  T
Q  208 aatatttttaatatt 222  Q
     ||||||||||||||    
T  29303187 tatatttttaatatt 29303173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 31549021 - 31549075
Alignment:
Q  25 catgatcctgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    |||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  31549021 catgatcacgaatgtgtttcgcatgattgtgcattatcaaattcaattttgcaat 31549075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 41422808 - 41422891
Alignment:
Q  79 taatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttg 166  Q
    ||||||| ||||||||||| || |||| |||||||||  ||||||||| |    |||||||||||||| |||||||||||||||||||    
T  41422808 taatttatttttttggaaccttagaaatacaagattatgattaatttcat----aggctcattttcaactaaaatataatttattttg 41422891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 31549117 - 31549162
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaat 123  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  31549117 ataatttaattttttggaacctttgaaaaacaagattaaaattaat 31549162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 247
Target Start/End: Complemental strand, 19678139 - 19678000
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcac 206  Q
    ||||||||| ||||||||||  ||||| | ||||||||| ||||||||||||| |||| ||||| | | || ||| |||||  |  ||||||||||||||    
T  19678139 caagattaagattaatttctctagtagacccattttcaactaaaatataatttgtttt-gttatgagaattctcccaattttctggataataaatatcac 19678041  T
Q  207 taatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
      |||||||||||||| |  || |||| |||||||||||||    
T  19678040 atatatttttaatattagtaagacacattattagaaacaaa 19678000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 25621588 - 25621500
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttg 166  Q
    |||||||| ||||||| ||| ||| |||||||||||||| |||||||| |   |||||  ||||||||| ||||||||||||| |||||    
T  25621588 ataatttatttttttgaaacctttaaaagacaagattaagattaatttatcttgtaggtccattttcaactaaaatataatttgttttg 25621500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 41423066 - 41423145
Alignment:
Q  330 ggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacattaacagactt 409  Q
    ||||||||||||||||||||||  ||| |   |||||| ||| ||||| ||| ||||||| |||||||||||||||||||    
T  41423066 ggtgtatatagaaatctttgtgttatatgaaggtatatctagcaaatctcgcaaaaagggccaaaaacattaacagactt 41423145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 351
Target Start/End: Complemental strand, 6221475 - 6221262
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    ||||| || ||||||| |||||| |||| |||| ||| ||||||| |||||||  ||||||||||||    ||||||||||||||   || ||||| |||    
T  6221475 atttttaactaaaatagaatttactttg-ttatgaaaattatcctcatttcttggataataaatatcgtagatatttttaatattaatgaagcacattat 6221377  T
Q  238 tagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaat-ttttctatatgaagggtgta 335  Q
    ||| ||||||||||         || ||||||||| |||||| ||||||||||   || ||||| |||||||||||||| |||| |||| | ||||||||    
T  6221376 taggaacaaaaggcctaaaaaaatatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaattttttttata-ggagggtgta 6221278  T
Q  336 tatagaaatctttgtg 351  Q
    ||||||||| ||||||    
T  6221277 tatagaaatatttgtg 6221262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 13597733 - 13597787
Alignment:
Q  25 catgatcctgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    ||||||| ||||||||| || ||||||| |||||||||||||| |||||||||||    
T  13597733 catgatcatgaatgtgtctcgcatgattttgcattatcaaatttaattttgcaat 13597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 19685757 - 19685679
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaa 343  Q
    ||||||||| |||||| |||||||||||  || ||||| |||||||||||||||||| |||| | ||||||||||||||||    
T  19685757 caccaatttcttcgataataaattttttagcatattatcaagaacaaccaaattttt-tata-ggagggtgtatatagaaa 19685679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 33015333 - 33015420
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    ||||||||| |||||| ||||||||||   || ||||| |||||||| ||||||||| |||| || |||||||||||||||| ||||||    
T  33015333 caccaatttcttcgataataaatttttgagcatattatcaagaacaagcaaatttttttatagga-gggtgtatatagaaatatttgtg 33015420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 44314181 - 44314268
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    ||||||||| |||||| ||||||||||   || ||||| |||||||||||||||||| || | | ||||||||||||||||| ||||||    
T  44314181 caccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttaca-ggagggtgtatatagaaatttttgtg 44314268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 44322360 - 44322447
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    ||||||||| |||||| ||||||||||   || ||||| |||||||||||||||||| || | | ||||||||||||||||| ||||||    
T  44322360 caccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttaca-ggagggtgtatatagaaatttttgtg 44322447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 2553987 - 2553933
Alignment:
Q  296 attattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||||||||||||||| ||||| |||| | ||||||||||||||||| ||||||    
T  2553987 attattaagaacaaccaattttttttata-ggagggtgtatatagaaatttttgtg 2553933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 430
Target Start/End: Complemental strand, 9057341 - 9057201
Alignment:
Q  287 ttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaa 386  Q
    ||||| |||| ||||||||| |||||||   || |||| | ||||||||||||||||||||||| | | | |||||||||||||| ||||   | |||||    
T  9057341 ttttggcacaatattaagaaaaaccaaaaaatt-tatagggagggtgtatatagaaatctttgt-ataaaagggtgtatatatagcaaattgagacaaaa 9057244  T
Q  387 gggtcaaaaacattaacagacttcagcctaacctttcatcatgt 430  Q
    ||| | | |||||||||||||||||||  | ||||||| |||||    
T  9057243 ggg-ccataacattaacagacttcagcacagcctttcaacatgt 9057201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 41422927 - 41422998
Alignment:
Q  176 ttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
    |||||| | ||||||  |||||||||||||| ||||||||||||||| | || ||||| |||||| ||||||    
T  41422927 ttatcccagtttcttggataataaatatcaccaatatttttaatattagtgaagcacattattaggaacaaa 41422998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 41826137 - 41826191
Alignment:
Q  296 attattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||||||||||||||| ||||| |||| | ||||||||||||||||| ||||||    
T  41826137 attattaagaacaaccaattttttttata-ggagggtgtatatagaaatttttgtg 41826191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 454
Target Start/End: Complemental strand, 14903897 - 14903810
Alignment:
Q  366 atatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaa 454  Q
    ||||| |||||| | ||||||||  ||||| ||||||||||||| |||| | || ||||||||||||| | | |||||||||| |||||    
T  14903897 atatataaaatcgcaccaaaaggaccaaaatcattaacagactttagcccagcccttcatcatgtcaa-tatctgggcctttatgtgaa 14903810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 38422799 - 38422843
Alignment:
Q  28 gatcctgaatgtgtttcacatgattctgcattatcaaattcaatt 72  Q
    |||| ||||||||| |||||||||  |||||||||||||||||||    
T  38422799 gatcatgaatgtgtctcacatgatcttgcattatcaaattcaatt 38422843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 78 - 454
Target Start/End: Complemental strand, 5771016 - 5770652
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||| | ||||||||  || ||||||||||||||| |||||||||    |||||||||||||||| ||||||||||||||||||   ||||    |    
T  5771016 ataatttactcttttggaaacttagaaagacaagattaatattaatttc----gtaggctcattttcaactaaaatataatttatttt---tata----t 5770928  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||| ||||||||  |||||||||||||| ||||||||||||||| | ||| |||| |||||| |||||| ||| |       || | ||||||| ||||    
T  5770927 atcccaatttcttggataataaatatcaccaatatttttaatattagtgagacacattattaggaacaaagggcccataaaaatatcgccaatttcttcg 5770828  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    || |||||||||||| |||||||||||||| |||||||||||| | ||  |||||||||||||||||||||||||  ||||| | |  ||||||  ||||    
T  5770827 ataataaattttttggcacattattaagaaaaaccaaatttttttgtagaaagggtgtatatagaaatctttgtgttatacgaggg--tatataataaat 5770730  T
Q  377 cacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaa 454  Q
    | ||||||||||| | |||| |||||||||||| |||| | || |||||||||||||  |||||||||||| ||||||    
T  5770729 ctcgccaaaagggcctaaaatattaacagacttgagcccatcccttcatcatgtcaatattttgggccttttagtgaa 5770652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 78 - 454
Target Start/End: Original strand, 43179379 - 43179753
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    ||||||||||||||  |||| ||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||||||||| |||| |||||||| ||    
T  43179379 ataatttaatttttgagaacctttgaaagataagattaagattaatttttttaatagactcatttttaactaaaatataatttgtttt-gttataaaatt 43179477  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||| ||||||||  |||||||||||||| | |||||| |||||| | |||| ||| |||||| ||||||  ||         || ||| ||||| || |    
T  43179478 atcccaatttcttggataataaatatcaccagtattttcaatattagtgaggtacattattaggaacaaagagcctaaaaaaatatcactaatttattgg 43179577  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    || |||| ||||||||||||||| |||||||||| |||    | |||| | ||||||||||||||||||||||||| ||||| | || ||||||| ||||    
T  43179578 ataataatttttttgacacattagtaagaacaacaaaaaagat-tataggcagggtgtatatagaaatctttgtgatatacgcgggtttatatagcaaat 43179676  T
Q  377 cacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaa 454  Q
    |  | ||||||||||||||||| ||||||  ||| ||| |  ||||||||||||||| |||| |||||||| ||||||    
T  43179677 cgtgtcaaaagggtcaaaaacactaacaggtttcggcccagtctttcatcatgtcaa-ttttagggcctttcagtgaa 43179753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 264 - 454
Target Start/End: Original strand, 8114052 - 8114241
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtg 362  Q
    ||||||||| |||||| |||| ||||||| ||||||||||||||||||||| ||||| |||| |||  |||||||||||||||||||||  ||| ||| |    
T  8114052 caccaatttattcgataataatttttttggcacattattaagaacaaccaatttttt-tataggaaatgtgtatatagaaatctttgtgttatagggg-g 8114149  T
Q  363 tatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaa 454  Q
    || |||||| ||||   || ||||||| |||||||||||||||||||||||| | || |||||||||||||  |||  |||||||| |||||    
T  8114150 tacatatagcaaattgtgctaaaagggccaaaaacattaacagacttcagccaagcccttcatcatgtcaatgtttgaggcctttatgtgaa 8114241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 40934198 - 40934037
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    ||||||| |||||||| ||| |||||||||||||||||| |||||||||| |||||  | || |||||| ||||| ||||||| |||| |||||||| ||    
T  40934198 ataatttcattttttgtaacctttgaaagacaagattaagattaatttctccagtatacccaatttcaactaaaacataatttgtttt-gttataaaatt 40934100  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattag 240  Q
    |||| ||||||||  ||||||||||| |  ||||||||||||||| | ||| |||| ||||||    
T  40934099 atccaaatttcttggataataaatatgatcaatatttttaatattagtgagacacattattag 40934037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 344
Target Start/End: Original strand, 39038847 - 39039110
Alignment:
Q  80 aatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttat 179  Q
    |||||||||||||| ||| ||| | |||||||||||| |||||||| |  ||||||| |||||| || ||||||||||||| ||||| |   ||| ||||    
T  39038847 aatttaattttttgaaacctttaacagacaagattaagattaatttatctagtaggcccatttttaactaaaatataatttgttttgttacgaaaattat 39038946  T
Q  180 cctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgat 278  Q
    || ||||||||  | |||||||||||| ||||||||||||||| | |||||||| ||| || || ||| ||| |       || ||| ||||| || |||    
T  39038947 cccaatttcttggacaataaatatcaccaatatttttaatattagtgaggcacattatgaggaataaagggcccaaaaaactatcactaatttctttgat 39039046  T
Q  279 gataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaat 344  Q
     |||| ||||||  |||||||| ||||||||||||||||||  ||| | ||||||||||| |||||    
T  39039047 aataattttttt--cacattataaagaacaaccaaattttttaataaggagggtgtatatcgaaat 39039110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 78 - 412
Target Start/End: Complemental strand, 9420605 - 9420272
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||||||  ||| |||||||||||||| |||| |||||  || |  ||||||||||| ||||||| ||||||||||| |||| ||| |    
T  9420605 ataatttatttttttggaatctttaaaagacaagattaagattattttctctaggaaactcattttcaactaaaataaaatttattttg-ttatgaaaat 9420507  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttc 275  Q
     |||||||||||||  ||||||||| |||  |||||||| ||||||   |||||| |  ||||   | ||| ||| |       || ||||||  | ||     
T  9420506 aatcctaatttcttggataataaatttcaacaatattttaaatattaatgaggcatatcattatgtaaaaagggcccaaaacaatatcaccaagctcttt 9420407  T
Q  276 gatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaa 375  Q
    ||| ||||||||| || |||||| ||||||||||| || ||||| || | || |||| ||||||||||||||||||  ||||||| |||||||||| |||    
T  9420406 gataataaattttatggcacatttttaagaacaactaatttttt-taaagga-gggtatatatagaaatctttgtgctatacgggggtatatatagtaaa 9420309  T
Q  376 tcacgccaaaagggtcaaaaacattaacagacttcag 412  Q
    ||  |||| ||||| ||||| ||||||||||||||||    
T  9420308 tcgtgccataagggccaaaagcattaacagacttcag 9420272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 82 - 248
Target Start/End: Original strand, 35118206 - 35118368
Alignment:
Q  82 tttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcc 181  Q
    |||||||||||||||| |||||||||||| ||| | |||||||| || |||||||| |||||||| ||||||||||||| |||| |||||||| || ||     
T  35118206 tttaattttttggaacctttgaaagacaacattcagattaatttttttagtaggcttattttcaactaaaatataatttgtttt-gttataaaattctc- 35118303  T
Q  182 taatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaa 248  Q
     ||||| ||  ||||||||||| || ||||| ||||||||| | |||| | | ||||||||||||||    
T  35118304 -aatttattggataataaatatgaccaatatatttaatattagtgagg-aaattattagaaacaaaa 35118368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 28460206 - 28460338
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcctaatt 186  Q
    ||||||||||| ||| |||||||| |||||||||||||| |  |||| || ||||||||| |||||||| |||| |||| |||| ||| |||||| || |    
T  28460206 ttttttggaacctttaaaagacaatattaaaattaatttttctagtaagcccattttcaactaaaatatcatttgtttt-gttaaaaaattatccaaact 28460304  T
Q  187 tcttcaataataaatatcactaatatttttaata 220  Q
    ||||  |||||||||||||| |||||||||||||    
T  28460305 tcttggataataaatatcaccaatatttttaata 28460338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 273 - 433
Target Start/End: Complemental strand, 44733480 - 44733322
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacg-ggtgtatatatag 371  Q
    |||||| ||| ||||||  |||||||||||||||||||||||| ||| |||| | | ||||||||||||||| ||||||   |||| || ||||||| ||    
T  44733480 ttcgataatagatttttcaacacattattaagaacaaccaaatctttttata-gtatggtgtatatagaaatatttgtg--ctacgtggggtatatacag 44733384  T
Q  372 aaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
     ||||||||||||||| |  ||||||||||||||| ||||||| |||  |||||||| ||||    
T  44733383 caaatcacgccaaaagagcaaaaaacattaacagatttcagccgaacacttcatcatatcaa 44733322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 246
Target Start/End: Complemental strand, 21863741 - 21863581
Alignment:
Q  86 attttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaa 184  Q
    |||||||||||  |||||| |||| |||||| ||||||||||  | | ||  ||||||||| |||||||||||||  |||| |||| ||| |||||  ||    
T  21863741 attttttggaatctttgaaggacatgattaagattaatttctctacttggtccattttcaactaaaatataatttgctttg-ttatgaaaattatctcaa 21863643  T
Q  185 tttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaa 246  Q
    |||||| ||||||||||||||| ||||||||||||||| | | |||||| |||||| |||||    
T  21863642 tttcttgaataataaatatcaccaatatttttaatattagtggggcacattattaggaacaa 21863581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 44733763 - 44733619
Alignment:
Q  99 tttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataat 197  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |||| || |||||||||| ||||| ||| |||| || |||||||  |||||    
T  44733763 tttgaaagacaagattaaagttaatttctt-agtaggctcattttcaactaaattagaatttatttt-gttatgaaaattat-ctcatttcttggataat 44733667  T
Q  198 aaatatcactaatatttttaatattggcgaggcacaatattagaaaca 245  Q
    ||||||||   ||||||| |||||| | ||  |||| |||||||||||    
T  44733666 aaatatcatcgatattttcaatattagtgacacacattattagaaaca 44733619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 48636812 - 48636674
Alignment:
Q  109 aagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcact 207  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||||||||||  ||||||||| ||| || ||| ||||| ||  ||||||||||||||     
T  48636812 aagattaagattaatttcttcagtaggcccattttcaactaaaatataattt-gtttggttatgaaaattctcccaattttttggataataaatatcaca 48636714  T
Q  208 aatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
      ||||||||||||| |  || |||| |||||| ||||||    
T  48636713 tgtatttttaatattagtaagacacattattaggaacaaa 48636674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 45446031 - 45446109
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttatttt 165  Q
    ||||||||||| ||||||||| |||||||||||||||||||  |||||||  |||||||| ||||||||||||| ||||    
T  45446031 ttttttggaacctttgaaagaaaagattaaaattaatttctctagtaggccaattttcaactaaaatataatttgtttt 45446109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 8604552 - 8604637
Alignment:
Q  79 taatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattt 164  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| || |  ||||||   |||||||| |||||||||||||||||    
T  8604552 taatttaattttttggaacctttgaaagacaagattaagattaacttatctagtaggtcaattttcaaataaaatataatttattt 8604637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 351
Target Start/End: Original strand, 8389314 - 8389526
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    |||||||| ||||||| |||||  |||| |||| ||| ||||||| |||||||  ||||||||||||    ||||||||||||||   || ||||| |||    
T  8389314 attttcaactaaaatagaatttgctttg-ttatgaaaattatcctcatttcttggataataaatatcgtcgatatttttaatattaatgaagcacattat 8389412  T
Q  238 tagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtat 336  Q
    ||| |||||| ||| |       || ||||||||| |||||| ||||||||||   || ||||| |||||||||||||||||| |||| | |||||||||    
T  8389413 taggaacaaagggcccaaaaaaatatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttata-ggagggtgtat 8389511  T
Q  337 atagaaatctttgtg 351  Q
    |||||||| ||||||    
T  8389512 atagaaatatttgtg 8389526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 360
Target Start/End: Original strand, 24441940 - 24442163
Alignment:
Q  137 tcattttcaattaaaatataatttattttggttataaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaata 236  Q
    ||||||||||  |||||||||||| ||||| |  |||| |||||| ||||| ||  |||||||||||||| ||||||||||||||| |    ||||| ||    
T  24441940 tcattttcaacaaaaatataatttgttttgttattaaaattatcccaatttattggataataaatatcaccaatatttttaatattagttgagcacatta 24442039  T
Q  237 ttagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgta 335  Q
    |||| |||||| | | |       || || |||||| || ||| ||  |||||||| |||||||||||||||| || ||||||| |||| | ||| ||||    
T  24442040 ttaggaacaaaggacccaaaaaaatatcaacaatttctttgataat-tattttttggcacattattaagaacacccgaatttttttatagggaggatgta 24442138  T
Q  336 tatagaaatctttgtgaaatacggg 360  Q
    ||||||||| ||||||  |||||||    
T  24442139 tatagaaatttttgtgctatacggg 24442163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 28460379 - 28460482
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatataga 372  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||| | || | | | |||||||||||||||  |||||  | ||||| ||||||||||     
T  28460379 ttcgataataatttttttggcacattattaagaacaaccaaatttgtttaaagggaaggtgtatatagaaattgttgtgctaaacgggggtatatatagc 28460478  T
Q  373 aaat 376  Q
    ||||    
T  28460479 aaat 28460482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 41822149 - 41822251
Alignment:
Q  138 cattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaata 236  Q
    |||||| || || ||||||||||||||| ||||| ||| |||||| ||||||||  |||||||||||||  ||||||||||||||| | |||||||| ||    
T  41822149 catttttaactataatataatttatttt-gttatgaaaattatccaaatttcttggataataaatatcatcaatatttttaatattagtgaggcacatta 41822247  T
Q  237 ttag 240  Q
    ||||    
T  41822248 ttag 41822251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 8113870 - 8114011
Alignment:
Q  79 taatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagtt 177  Q
    ||||||| |||||| |||| ||||||||| || ||||| |||||| |||  |||||| | |||||||| ||||||||||||| ||   ||||| ||| ||    
T  8113870 taatttatttttttagaacctttgaaagaaaatattaagattaatatctgtagtaggtttattttcaactaaaatataatttgtt---gttatgaaaatt 8113966  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatatt 222  Q
    | || || || ||  |||||||||||||| |||||||||||||||    
T  8113967 accccaacttattggataataaatatcaccaatatttttaatatt 8114011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 29636905 - 29637010
Alignment:
Q  138 cattttcaattaaaatataatttattttggttataaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    ||||||||| ||||||||||||| ||||| ||  ||| |||||| ||||| ||  |||||||||||||  ||||||||||||||| |  || |||| |||    
T  29636905 cattttcaactaaaatataatttgttttgttttgaaaattatcccaatttattggataataaatatcatcaatatttttaatattagtcagacacattat 29637004  T
Q  238 tagaaa 243  Q
    ||||||    
T  29637005 tagaaa 29637010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 8604733 - 8604819
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    ||||||||| |||||| |||| |||| || ||||||||||||||||||||||||||| |||| | | |||||| |||||||||||||||    
T  8604733 caccaatttcttcgataataatttttctggcacattattaagaacaaccaaattttt-tataagga-ggtgtacatagaaatctttgtg 8604819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 247
Target Start/End: Original strand, 6189387 - 6189526
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcctaatttcttcaataataaatatcact 207  Q
    ||||||||| ||||||||||  |||| || ||||||||| ||||||||||||| ||||| | | | | || ||| |||||  |  ||||||||||||||     
T  6189387 caagattaagattaatttctctagtatgcccattttcaactaaaatataatttgttttgttaagagaattctcccaattttctggataataaatatcaca 6189486  T
Q  208 aatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     |||||||||||||| |  || |||| |||||| ||||||    
T  6189487 tatatttttaatattagtaagacacattattaggaacaaa 6189526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 8069691 - 8069633
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttg 166  Q
    ||||||||| ||||||||||  ||||||| ||||||||| ||||||||||||| |||||    
T  8069691 caagattaagattaatttctctagtaggcccattttcaactaaaatataatttgttttg 8069633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 351
Target Start/End: Original strand, 35478036 - 35478204
Alignment:
Q  183 aatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgat 281  Q
    ||||||||  ||||||||||||    |||||||||||||| |||| ||||| |||||  |||||| ||| |       || ||| ||||| |||||| ||    
T  35478036 aatttcttggataataaatatcgtcgatatttttaatattagcgaagcacattattaagaacaaagggcccaataaaatatcactaatttcttcgataat 35478135  T
Q  282 aaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||||    || |||||||||||||||||| ||||| |||| | ||||||||||||||||| ||||||    
T  35478136 aaattttcaagcatattattaagaacaaccaattttttttata-ggagggtgtatatagaaatttttgtg 35478204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 13754046 - 13753992
Alignment:
Q  296 attattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||||||||||||||| ||||| |||| | ||||||||||||||||| ||||||    
T  13754046 attattaagaacaaccaattttttttata-ggagggtgtatatagaaatttttgtg 13753992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 20394837 - 20395012
Alignment:
Q  176 ttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-tt 274  Q
    |||||| |||||||| |||||||||||||    |||||||||||||| | || ||||| |||||  || ||| ||| |       || ||||||||| ||    
T  20394837 ttatcccaatttcttgaataataaatatcgtcgatatttttaatattagtgaagcacattattaagaaaaaagggcccaaaaaaatatcaccaatttctt 20394936  T
Q  275 cgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||| |||||||||    || ||||||| |||||||||| ||||| |||| || |||||||||||||||| ||||||    
T  20394937 cgataataaattttcgagcatattattaggaacaaccaattttttttatagga-gggtgtatatagaaatatttgtg 20395012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 48238570 - 48238512
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttg 166  Q
    ||||||||| ||| ||||||  ||||||| ||||||||| ||||||||||||| |||||    
T  48238570 caagattaagatttatttctctagtaggcccattttcaactaaaatataatttgttttg 48238512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 4539830 - 4539750
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaat 344  Q
    ||||||||| |||||| ||||||||||   || ||||| |||||||||||| ||||| |||| | |||||||||||||||||    
T  4539830 caccaatttcttcgataataaatttttgagcatattatcaagaacaaccaattttttttata-ggagggtgtatatagaaat 4539750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 78 - 479
Target Start/End: Original strand, 8806273 - 8806671
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||||||||| | ||  ||||||||||| ||||||||||||| |||| |||||||| ||    
T  8806273 ataatttaaatttttgaaacctttgaaagacaagattaaaattaatttctttactatactcattttcaactaaaatataatttgtttt-gttataaaatt 8806371  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaa-tttttcg 276  Q
    |||| ||||||||  ||||||||||| || ||||||||||||||| | |||||||   ||||| |||||| ||  |       || |||||| |||||      
T  8806372 atcccaatttcttggataataaatatgacaaatatttttaatattagtgaggcac---attaggaacaaagggaacaaaaaaatatcaccaatttttttt 8806468  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaag--ggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaa 374  Q
    || |||| ||||||| ||||||| ||||||||||||| ||||| | |||  ||  ||||||||||||||||||||||| | | | | |||||||||| ||    
T  8806469 ataataatttttttgccacattagtaagaacaaccaattttttttttatagagaaggtgtatatagaaatctttgtgataaatgag-gtatatatagcaa 8806567  T
Q  375 atcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaattttttctatatacacccct 474  Q
    |||| |  ||||||| ||||| | ||||||  |||||||| | | ||||||||||||||  ||| |||||||| ||| ||  ||| ||||||||||| ||    
T  8806568 atcatgataaaagggccaaaatctttaacaagcttcagcccagcttttcatcatgtcaatctttagggcctttcagt-aaactttgctatatacacctct 8806666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 78 - 433
Target Start/End: Complemental strand, 3654821 - 3654464
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| |||||  ||||||  ||||||||| |||||||||||||||||| || ||||| ||    
T  3654821 ataatttaatttttttgaacctttgaaagacaagattaaaattagtttctctagtaggtccattttcaactaaaatataatttatttt-gtaataaaatt 3654723  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatatt-ggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttc 275  Q
    ||| |||||||||  |||||||||||||  |||||||||||||||        |||| |||||| || ||| || ||       || ||| ||||| |||    
T  3654722 atcttaatttcttggataataaatatcatcaatatttttaatattaattttttcacattattaggaa-aaagggttcaaaaaaatatcactaatttcttc 3654624  T
Q  276 gatgataa--attttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaa 373  Q
    ||| ||||   ||||||| |||||| |||||||||||||||||||| ||||   |||||  |||||||||||||||||| ||| ||| ||||||||||      
T  3654623 gataataatttttttttggcacatttttaagaacaaccaaatttttttataaagagggttaatatagaaatctttgtgatatatgggggtatatatagcg 3654524  T
Q  374 aatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    ||||| | ||||||||||||||||||||||||  ||||||| | |||||||| |||||||    
T  3654523 aatcatgtcaaaagggtcaaaaacattaacaggtttcagcccatcctttcattatgtcaa 3654464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 78 - 473
Target Start/End: Original strand, 38915669 - 38916063
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||||||| |||||||||||| ||||| | ||||||||  |||||||  |||||||| |||||||| || | |||| |||||||| ||    
T  38915669 ataatttaattttttggaacctttgaaagacaacattaagactaatttctctagtaggcctattttcaactaaaatat-atatttttttgttataaaatt 38915767  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||| ||||||||  ||||||||||| |||||||| ||||||||| | |||||||| |||||| |||||| ||| |       || ||  ||||| || |    
T  38915768 atcccaatttcttggataataaatatgactaatatatttaatattagtgaggcacattattaggaacaaagggc-cccaaaaatatcataaatttctttg 38915866  T
Q  277 atga---taaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaa 373  Q
    || |   ||| ||||||  |||||||||||||| |||||| ||||| |||  | ||||||||||||||||||||||| | ||||| | ||||| |||| |    
T  38915867 ataatactaatttttttcgcacattattaagaaaaaccaattttttttatggggagggtgtatatagaaatctttgt-atatacgagggtatacatagca 38915965  T
Q  374 aatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaattttttctatatacacccc 473  Q
    |||   | || ||||| ||||| ||| ||||| |||||| | | |||||||||||||||| | ||||||||||| ||||||  ||| |||||||||||||    
T  38915966 aattgagacagaagggccaaaatcatcaacaggcttcagtccagcctttcatcatgtcaa-tgtttgggccttttagtgaa-ctttactatatacacccc 38916063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 78 - 414
Target Start/End: Original strand, 5121142 - 5121482
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaat--taatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaa 174  Q
    |||||||| |||||| |||| |||||||||||||||||| ||  ||||||||  |||||||| |||||||||||||||| ||||| ||||  |||| |||    
T  5121142 ataatttatttttttagaacctttgaaagacaagattaagattataatttctctagtaggctaattttcaattaaaataaaatttgtttt-attatgaaa 5121240  T
Q  175 gttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-t 273  Q
     ||||   ||||| ||  |||||||||||||| |||||||||||||||   ||| |||| |||||| |||||| ||  |       || ||| ||||| |    
T  5121241 attatttcaattttttggataataaatatcaccaatatttttaatattattgagccacattattaggaacaaagggaccaaaaaaatatcactaatttct 5121340  T
Q  274 tcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaa 373  Q
    ||||| |||| ||||||  | |||||||||||  |||||||||||| |||| | |  |||||||||||| ||||||||  ||||||| ||||||||||      
T  5121341 tcgataataattttttttccccattattaagattaaccaaatttttttatagggaaagtgtatatagaattctttgtgctatacgggggtatatatagcg 5121440  T
Q  374 aatcacgccaaaagg-gtcaaaaacattaacagacttcagcc 414  Q
    |||||||| ||||||    ||||||||| |||||||||||||    
T  5121441 aatcacgcaaaaaggacaaaaaaacattcacagacttcagcc 5121482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 6769319 - 6769483
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||||  |||||||| ||||| || ||||||||||||| |||| |||||||| ||    
T  6769319 ataatttaattttttggaaaatttcaaagacaacattaaaattaatttct--agtaggcttatttttaactaaaatataatttgtttt-gttataaaatt 6769415  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     ||  ||||||||  ||||||||||| |  ||||| |||||||||   |||||||| |||||||||||||    
T  6769416 ctc--aatttcttggataataaatatgatcaatatatttaatattattgaggcacattattagaaacaaa 6769483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 99 - 351
Target Start/End: Complemental strand, 29149781 - 29149528
Alignment:
Q  99 tttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataat 197  Q
    |||||||||||||||||| ||||||||||  |||||||| |||||||| ||||||| |||||  ||  ||||| ||| |||||  ||||| ||  |||||    
T  29149781 tttgaaagacaagattaagattaatttctctagtaggctgattttcaactaaaataaaatttgctt--gttatgaaaattatctcaattttttggataat 29149684  T
Q  198 aaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaatttttt-gacac 295  Q
    ||||||||| |||||||||||||||   |||||||| |||||| |||||| | |||       || ||| ||||| || ||| |||| |||||| |||||    
T  29149683 aaatatcacaaatatttttaatattaatgaggcacattattaggaacaaatgactcaaaaaaatatcacaaatttctttgataataattttttttgacac 29149584  T
Q  296 attattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||||| ||||| ||| ||||| |||| | | ||||||||||||||||||||||    
T  29149583 attattaaaaacaatcaattttttttataagcatggtgtatatagaaatctttgtg 29149528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 99 - 414
Target Start/End: Original strand, 13820844 - 13821157
Alignment:
Q  99 tttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataat 197  Q
    |||||||||||||||| | |||||||| || ||||| | ||||||||| ||||||| | ||| ||||| |||| ||| |||||| |||||||| ||||||    
T  13820844 tttgaaagacaagatttagattaatttatttagtagacccattttcaactaaaatagattttgttttg-ttatgaaaattatccaaatttcttgaataat 13820942  T
Q  198 aaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacaca 296  Q
    |||||| || |||||||||||| || | ||| |||| |||||| ||| |  | | |       || || |||||| |||||| |||| |||||||||| |    
T  13820943 aaatatgaccaatatttttaatgttagtgagacacattattaggaactag-gacccaaaaaaatatcatcaatttcttcgataataa-ttttttgaca-a 13821039  T
Q  297 ttattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaa 396  Q
    ||||||||||||||||||||||| ||   | || || |||||||||||  |||||  ||| ||| |||||||||| |||||  |||| |||||  |||||    
T  13821040 ttattaagaacaaccaaatttttttacggggagagtttatatagaaattgttgtgctatatgggggtatatatagcaaatcgtgccataagggctaaaaa 13821139  T
Q  397 cattaacagacttcagcc 414  Q
    ||||||||||||||||||    
T  13821140 cattaacagacttcagcc 13821157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 270 - 433
Target Start/End: Original strand, 16686829 - 16686990
Alignment:
Q  270 tttttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatat 369  Q
    ||||||||| |||| ||||||| |||||||| | |||||||||  ||||| |||| | |||||||| |||||||||||||||  ||| ||   |||||||    
T  16686829 tttttcgataataatttttttggcacattatcatgaacaacca--tttttttatagggagggtgtacatagaaatctttgtgctataaggtattatatat 16686926  T
Q  370 agaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    || |||||  |  ||||||| ||||||| |||||||||||||||| |||| |||||||||||||    
T  16686927 agcaaatcttgataaaagggccaaaaactttaacagacttcagccaaacccttcatcatgtcaa 16686990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 99 - 433
Target Start/End: Original strand, 16040161 - 16040492
Alignment:
Q  99 tttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataat 197  Q
    ||||||||| || ||||| |||||| |||  ||||||| |||||||||||||||||  |||| |||| ||||| ||| |||||  ||||||||  ||||     
T  16040161 tttgaaagataatattaagattaatatctctagtaggcccattttcaattaaaataagatttgtttt-gttatgaaaattatctcaatttctttgataaa 16040259  T
Q  198 aaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacaca 296  Q
    ||||||||| ||||||||| | ||| | ||| |||| |||||| |||||| ||| |       || ||| ||||| ||| || | ||||||||   ||||    
T  16040260 aaatatcaccaatattttttaaattagtgagacacattattaggaacaaagggcccaaaaaaatatcactaatttcttcaataacaaatttttgagcaca 16040359  T
Q  297 ttattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaa 396  Q
    ||||||||||||||||| ||||| |||| | ||||| ||||||||||| ||||||  | | |||  ||||||||| ||||| |||| |||| | | ||||    
T  16040360 ttattaagaacaaccaattttttttata-ggagggtttatatagaaatatttgtgctacatggg-atatatatagcaaatcgcgcc-aaagagccgaaaa 16040456  T
Q  397 cattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    |||| ||||| ||||||| |||| |||| ||||||||    
T  16040457 catt-acagatttcagcccaacccttcaacatgtcaa 16040492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 273 - 412
Target Start/End: Original strand, 33922441 - 33922580
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatataga 372  Q
    |||||| ||||||||||  ||||||||||| ||||| |||| ||||| |||  | |||||||||| |||||| |||||   |||| || ||||||||||     
T  33922441 ttcgataataaatttttcaacacattattatgaacagccaattttttttatggggagggtgtatacagaaatatttgttttatacaggggtatatatagc 33922540  T
Q  373 aaatcacgccaaaagggtcaaaaacattaacagacttcag 412  Q
    ||||| | | |||||||||||||| ||||||| |||||||    
T  33922541 aaatcgcactaaaagggtcaaaaagattaacatacttcag 33922580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 29789695 - 29789526
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||| ||  ||||||| |||||||||| ||||||||||  ||||| | ||||||||| ||||||| ||||| ||||| |||| ||| |    
T  29789695 ataatttatttttttgaaatctttgaaaaacaagattaagattaatttctctagtagacccattttcaactaaaatagaatttgttttg-ttatgaaaat 29789597  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
    ||| | ||||||||  ||||||||||||||  |||||||| ||||  | |||||||| | |||| ||||||    
T  29789596 tattccaatttcttggataataaatatcaccgatattttttatatcagtgaggcacatttttaggaacaaa 29789526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 332 - 433
Target Start/End: Complemental strand, 26401821 - 26401720
Alignment:
Q  332 tgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtc 431  Q
    ||||||||||||| ||||||  ||||||| ||||||||||  |||||| ||||||||| |||||||||||||  | ||||||| | ||||||||||| ||    
T  26401821 tgtatatagaaatttttgtgctatacgggggtatatatagctaatcacaccaaaagggccaaaaacattaacttatttcagcccatcctttcatcatttc 26401722  T
Q  432 aa 433  Q
    ||    
T  26401721 aa 26401720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 406
Target Start/End: Complemental strand, 2677017 - 2676788
Alignment:
Q  176 ttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-tt 274  Q
    ||||||| |||||||  ||||||||||||    ||||||||||||||   || ||||| |||||| |||||| ||| |       || ||||||||| ||    
T  2677017 ttatcctcatttcttggataataaatatcgtcgatatttttaatattaatgaagcacattattaggaacaaagggcccaaaaaaatatcaccaatttctt 2676918  T
Q  275 cgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaa 374  Q
    |||| ||||||||||   || ||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||||  | | |||  ||||||||||||    
T  2676917 cgataataaatttttaagcatattatcaagaacaaccaaatttttttata-ggagggtgtatatagaaatatttgtgttacatggg-atatatatagaaa 2676820  T
Q  375 atcacgccaaaagggtcaaaaacattaacaga 406  Q
    ||| | | ||||||| |||||| | |||||||    
T  2676819 atctcactaaaagggccaaaaatactaacaga 2676788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 13826180 - 13826343
Alignment:
Q  86 attttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctc--attttcaattaaaatataatttattttggttat-aaagttatcct 182  Q
    |||||||||||  ||||| |||||||||||| |||||||| |  |||| || |  |||||||| ||||||| ||||| |||| ||||| ||| ||||||     
T  13826180 attttttggaatttttgagagacaagattaagattaatttatctagtaagcccatattttcaactaaaatagaatttgtttt-gttatgaaaattatccc 13826278  T
Q  183 aatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
    ||||||||  |||||||||||||   |||||||||||||| | ||| |||| |||||| ||||||    
T  13826279 aatttcttggataataaatatcatcgatatttttaatattagtgagacacattattaggaacaaa 13826343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 38491156 - 38491018
Alignment:
Q  109 aagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcact 207  Q
    |||||||| |||||||| |  ||||||| ||||||||| ||||||||||||| |||| ||||| ||| || |||||||||  |  ||||||||||||||     
T  38491156 aagattaagattaatttatctagtaggcccattttcaactaaaatataatttgtttt-gttatgaaaattctcctaattttctggataataaatatcaca 38491058  T
Q  208 aatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     |||||||||||||| |  || |||| |||||| ||||||    
T  38491057 tatatttttaatattagtaagacacattattaggaacaaa 38491018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 331 - 433
Target Start/End: Complemental strand, 29789261 - 29789159
Alignment:
Q  331 gtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgt 430  Q
    |||||||||||||||| ||||  ||||  | |||||||||| |||||| |||| || ||||||||||||||||  ||||||| | | || ||||||||||    
T  29789261 gtgtatatagaaatctctgtgttatacaagggtatatatagcaaatcatgccataatggtcaaaaacattaacgaacttcagtcaagcccttcatcatgt 29789162  T
Q  431 caa 433  Q
    |||    
T  29789161 caa 29789159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 37134878 - 37134741
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||| | ||| ||||||||||||||| ||||||||| | |  ||||||   |||||||| ||||||||||||| |||| ||||| ||| |    
T  37134878 ataatttattttttcgaaacctttgaaagacaagatcaaaattaatatttctagtaggtgtattttcaactaaaatataatttgtttt-gttatgaaaat 37134780  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttt 215  Q
    ||| | ||||||||  |||||||||||||| ||| ||||    
T  37134779 tattccaatttcttagataataaatatcaccaatttttt 37134741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 351
Target Start/End: Complemental strand, 23962939 - 23962727
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    |||||||| ||||||| |||||  |||| |||| ||| |||||  ||||||||  ||||||||||||  | ||||||||||||||   || ||||  |||    
T  23962939 attttcaactaaaatagaatttgctttg-ttatgaaaattatctcaatttcttggataataaatatcgttgatatttttaatattaatgaagcacgttat 23962841  T
Q  238 tagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtat 336  Q
    ||| |||||| ||| |       || ||||||||| |||||| ||||||||||   || ||||| |||||||||||||||||| |||| | |||||||||    
T  23962840 taggaacaaagggcccaaaaaaatatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttata-ggagggtgtat 23962742  T
Q  337 atagaaatctttgtg 351  Q
    |||||||| ||||||    
T  23962741 atagaaatgtttgtg 23962727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 43171359 - 43171515
Alignment:
Q  79 taatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtta 178  Q
    ||||||| ||||||||||| ||||||| | || ||||| ||||||||||  ||||||  ||||||||| |||||||| |||| || ||     ||| |||    
T  43171359 taatttatttttttggaacctttgaaaaaaaaaattaagattaatttctctagtaggtccattttcaactaaaatatcatttgttatg-----aaaatta 43171453  T
Q  179 tcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattag 240  Q
    ||  ||| | ||  |||||||||||||| ||||||||||||||| | || ||||| ||||||    
T  43171454 tctcaatatattggataataaatatcaccaatatttttaatattagtgaagcacattattag 43171515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 247
Target Start/End: Complemental strand, 7850425 - 7850286
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcac 206  Q
    ||||||||| |||||||||| |||||||  ||||||||| ||||||||||||| |||| ||||| ||| || ||  |||||  |  ||||||||||||||    
T  7850425 caagattaagattaatttctccagtaggtccattttcaactaaaatataatttgtttt-gttatgaaaattctctcaattttctggataataaatatcac 7850327  T
Q  207 taatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
      |||||||||||||| |  || |||| |||||| ||||||    
T  7850326 atatatttttaatattagtaagacacattattaggaacaaa 7850286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 413
Target Start/End: Complemental strand, 37134745 - 37134603
Alignment:
Q  270 tttttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatat 369  Q
    ||||||||| |||||||||||| |||||| ||||||||| |||||      |||| || |||||||||||||||| ||| ||  ||||||  ||||||||    
T  37134745 tttttcgataataaattttttggcacattgttaagaacatccaaaaaaaattatagga-gggtgtatatagaaatatttctgctatacggtggtatatat 37134647  T
Q  370 agaaaatcacgccaaaagggtcaaaaacattaacagacttcagc 413  Q
    || ||||  | ||||||||| |||||||||| | | ||||||||    
T  37134646 agcaaatatcaccaaaagggccaaaaacatttagaaacttcagc 37134603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 8806177 - 8806231
Alignment:
Q  25 catgatcctgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    ||||||| |||||| || |||||||||| || |||||||||||||||||||||||    
T  8806177 catgatcatgaatgcgtctcacatgattttgtattatcaaattcaattttgcaat 8806231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 43171660 - 43171715
Alignment:
Q  391 caaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggccttt 447  Q
    |||||||||||||||||||||||| |||| |||||||||||||  ||| ||||||||    
T  43171660 caaaaacattaacagacttcagcccaacc-ttcatcatgtcaatgtttggggccttt 43171715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 16040056 - 16040102
Alignment:
Q  33 tgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    |||||||||||| ||||||  ||||||||||||||||||| ||||||    
T  16040056 tgaatgtgtttcgcatgatcttgcattatcaaattcaattctgcaat 16040102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 18889022 - 18888945
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||| ||||||||||   || ||||| |||||||||||| ||||| |||| || |||||||||||||||| ||||||    
T  18889022 ttcgataataaatttttgagcatattatcaagaacaaccaattttttttatagga-gggtgtatatagaaatttttgtg 18888945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 38915574 - 38915627
Alignment:
Q  26 atgatcctgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    |||||| |||||| || || |||||||  |||||||||||||||||||||||||    
T  38915574 atgatcatgaatgcgtatcgcatgatttagcattatcaaattcaattttgcaat 38915627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 20891348 - 20891416
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaa 146  Q
    |||||||| ||||| ||||  |||||||||||| ||||| ||||||||||  | ||||| |||||||||    
T  20891348 ataatttattttttgggaatctttgaaagacaaaattaagattaatttctctaataggcccattttcaa 20891416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 81 - 419
Target Start/End: Original strand, 11680814 - 11681153
Alignment:
Q  81 atttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttat 179  Q
    ||||| || |||| ||| ||||||||| |||||||| |||||||| |  |||||| |||||||||| ||||||||||||| ||||| |||| ||| ||||    
T  11680814 atttatttgtttgaaacctttgaaagataagattaagattaatttttctagtaggttcattttcaactaaaatataatttgttttg-ttatgaaaattat 11680912  T
Q  180 cctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgat 278  Q
     | ||||| ||  |||||||||||||| ||||||||||||||| | || ||||| |||||| || ||| ||| |       ||  || ||||| || |||    
T  11680913 tccaatttattggataataaatatcaccaatatttttaatattagtgaagcacattattaggaaaaaagggcccaaaaaaatattactaatttcttggat 11681012  T
Q  279 gataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatca 378  Q
     |||| ||||||||||||| ||||||||||||||| ||||| |||| | ||||||||||||||||||||||||  ||| | | ||| |||||| ||||      
T  11681013 aataatttttttgacacatcattaagaacaaccaattttttatatagggagggtgtatatagaaatctttgtgttatatgagggtacatatagcaaattg 11681112  T
Q  379 cgccaaaagggtcaaaaacattaacagacttcagcctaacc 419  Q
    ||||||||||| ||||||||||||||||||| |||| ||||    
T  11681113 cgccaaaagggccaaaaacattaacagactttagcccaacc 11681153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 87 - 431
Target Start/End: Complemental strand, 26817497 - 26817160
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaat 185  Q
    ||||||||||  |||||||||||||||||| ||||||||||  |||| ||  |||||||| ||||||| ||||| ||   ||||| |||  ||||| |||    
T  26817497 ttttttggaatctttgaaagacaagattaagattaatttctctagtatgcctattttcaactaaaatagaatttgtt---gttatgaaaaatatcccaat 26817401  T
Q  186 ttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaa 284  Q
    |||||  |||||||||||||   |||||| ||||||| |  ||||||| ||||||||||||| ||  |       || || |||||| |||||| |||||    
T  26817400 ttcttggataataaatatcatcgatatttgtaatattagttaggcacattattagaaacaaagggtacaaaaaaatatcatcaatttcttcgataataaa 26817301  T
Q  285 ttttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaa 384  Q
    |||||   ||| |||||||||||||     ||||| | |  ||||||||||||||||||| ||||||  | |  || |||||||||||||||||||  ||    
T  26817300 tttttgagcaccttattaagaacaa-----ttttttttttagaagggtgtatatagaaatatttgtgctacattgg-gtatatatagaaaatcacgttaa 26817207  T
Q  385 aagggtcaaaaacattaacagacttcagcctaacctttcatcatgtc 431  Q
    || || |||||||||||||||| ||||||| | || |||||||||||    
T  26817206 aatggccaaaaacattaacagatttcagcccagccattcatcatgtc 26817160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 447
Target Start/End: Complemental strand, 19108092 - 19107720
Alignment:
Q  68 caattttgcaataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttgg 167  Q
    |||| ||| ||||||||| ||||||| ||| ||  ||||| |||||||| |||||||||    | | |||||||||||| |||||||||  || |||||     
T  19108092 caatattgaaataatttatttttttgaaaccttacaaagagaagattaagattaatttc----ggatgctcattttcaactaaaatatatatttttttgt 19107997  T
Q  168 ttataaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccacc 267  Q
    ||  ||| |||||| ||||| ||  |||||||||||||| ||||||||||||||| | |||| ||| ||| || |||||| ||| |       ||         
T  19107996 tttgaaaattatcccaattttttggataataaatatcaccaatatttttaatattagtgaggaacattatcaggaacaaagggc-ccaaaaaatattgta 19107898  T
Q  268 aatttttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatat 367  Q
    | || | | || |||| ||||||| |||||||||||||| |||||||    | |||| | ||||||||||||||||||| | | |  |||| | ||||||    
T  19107897 atttctcccataataatttttttggcacattattaagaataaccaaaaacatttatagggagggtgtatatagaaatctgtctta--tacgagggtatat 19107800  T
Q  368 atagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggccttt 447  Q
    |||| ||||||| ||||||||||| |||||||||||| |||| |||| | ||||||||||||| ||  ||| ||||||||    
T  19107799 atagcaaatcacaccaaaagggtctaaaacattaacatacttgagccaagcctttcatcatgtaaatatttggggccttt 19107720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 293 - 433
Target Start/End: Complemental strand, 15060101 - 15059965
Alignment:
Q  293 cacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtca 392  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||| || |||  | |  || ||||||||||  |||||||||||||||| ||    
T  15060101 cacattattaagaacaaccaaattttt-tatagga-gggtgtatatagaaat-ttcgtgctacattgg-gtatatatagcgaatcacgccaaaagggcca 15060006  T
Q  393 aaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    ||||| |||||| | ||||||| |||| |||||||||||||    
T  15060005 aaaaccttaacaaatttcagccaaacccttcatcatgtcaa 15059965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 264 - 414
Target Start/End: Complemental strand, 1131737 - 1131588
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtg 362  Q
    ||||||||| |||||| |||||||||    || |||||||||||||||||| ||||| |||| | ||||||||||||||||| ||||||    | |||      
T  1131737 caccaatttcttcgataataaattttcgagcatattattaagaacaaccaattttttttata-ggagggtgtatatagaaatttttgtgctgcatggg-a 1131640  T
Q  363 tatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcc 414  Q
    ||||||||| ||||| | | |||||||||||||||||||||||| |||||||    
T  1131639 tatatatagcaaatctctctaaaagggtcaaaaacattaacagaattcagcc 1131588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 406
Target Start/End: Complemental strand, 1603422 - 1603193
Alignment:
Q  176 ttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-tt 274  Q
    ||||||| |||||||  ||||||||||||    ||||||||||||||   || ||||| |||||| |||||| ||| |       || ||||||||| ||    
T  1603422 ttatcctcatttcttggataataaatatcgtcgatatttttaatattaatgaagcacattattaggaacaaagggcccaaaaaaatatcaccaatttctt 1603323  T
Q  275 cgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaa 374  Q
    |||| ||||||||||   || ||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||||  | | |||  ||||||||||||    
T  1603322 cgataataaatttttaagcatattatcaagaacaaccaaatttttttata-ggagggtgtatatagaaatatttgtgttacatggg-atatatatagaaa 1603225  T
Q  375 atcacgccaaaagggtcaaaaacattaacaga 406  Q
    ||| | | ||||||| |||||| | |||||||    
T  1603224 atctcactaaaagggccaaaaatactaacaga 1603193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 3229155 - 3229292
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||||||| || |||||||| |||||| |||||||||    ||||||| |||||||| ||  | ||||||| |||| ||||| ||| |    
T  3229155 ataatttatttttttggaaccttagaaagacacgattaagattaatttc----gtaggctaattttcaactaggaaataatttgtttt-gttatgaaaat 3229249  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaat 219  Q
    |||||  |||||||  |||||||||||||| ||||||||||||    
T  3229250 tatccacatttcttggataataaatatcaccaatatttttaat 3229292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 13758742 - 13758810
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaa-ttaaaata 154  Q
    ||||||| || ||||||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||    
T  13758742 ttttttgaaatatttgaaagacaagattaagattaatttctatagtaggctcattttcaacttaaaata 13758810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 33516611 - 33516724
Alignment:
Q  109 aagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcact 207  Q
    |||||||| ||||||||||  ||||||| ||||||||| ||||||||||||| |||| ||||| ||| || ||| |||||  |  ||||||||||||||     
T  33516611 aagattaagattaatttctctagtaggcccattttcaactaaaatataatttgtttt-gttatgaaaattctcccaattttctggataataaatatcaca 33516709  T
Q  208 aatatttttaatatt 222  Q
     ||||||||||||||    
T  33516710 tatatttttaatatt 33516724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 22012254 - 22012341
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    ||||||||| |||||| ||||||||||   || ||||| |||||||||||||||||| || | | ||||||||||||||||| ||||||    
T  22012254 caccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttaca-ggagggtgtatatagaaatttttgtg 22012341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 1213126 - 1213047
Alignment:
Q  375 atcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaa 454  Q
    |||||| |||||||| | |||||||| ||||||||||||  |||| | |||||||||||  ||| |||||||| ||||||    
T  1213126 atcacgtcaaaagggccgaaaacattcacagacttcagcacaaccctacatcatgtcaatatttggggcctttcagtgaa 1213047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 31129890 - 31129734
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||| ||| |  |||| | |||||||| ||||||||| |    || ||||||||||| |||||| |||||  |||  ||||| ||| |    
T  31129890 ataatttatttttttgaaacctgagaaatataagattaagattaatttcat----agactcattttcaactaaaatgtaattgtttt--gttatgaaaat 31129797  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatatta 239  Q
    ||||| ||||||||  |||||||||||||  ||||||||||||| | | |||||||| |||||    
T  31129796 tatcccaatttctttgataataaatatcatcaatatttttaatactagtgaggcacattatta 31129734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 30358835 - 30358798
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaac 310  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  30358835 ttcgttgataaattttttggcacattattaagaacaac 30358798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 30359652 - 30359615
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaac 310  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  30359652 ttcgttgataaattttttggcacattattaagaacaac 30359615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 1423044 - 1422961
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatatt 222  Q
    |||||||| ||||||| |||||  |||| |||| ||| |||||| ||||||||  |||||||||||||  |||||||||||||||    
T  1423044 attttcaactaaaatagaatttgctttg-ttatgaaaattatcccaatttcttggataataaatatcatcaatatttttaatatt 1422961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 3229341 - 3229381
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaa 313  Q
    |||||| |||||||||||| |||||||||||||| ||||||    
T  3229341 ttcgataataaattttttggcacattattaagaaaaaccaa 3229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 78 - 433
Target Start/End: Complemental strand, 52459166 - 52458813
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||||||  ||||||||||||||||||  |||||||||   |||||| ||||||||| ||||||| ||||| ||||| |||| |||      
T  52459166 ataatttatttttttggaatctttgaaagacaagattaaggttaatttctctggtaggcccattttcaactaaaatagaatttgttttg-ttatgaaaaa 52459068  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttc 275  Q
    ||||| ||||||||  |||||||||||||   |||||||||||||| | ||| |||| |||||| |||||| ||| |       || ||| ||||| |||    
T  52459067 tatcccaatttcttggataataaatatcatcgatatttttaatattagtgagacacattattaggaacaaagggcccaaaaaaatatcacaaatttcttc 52458968  T
Q  276 gatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaa 375  Q
    ||||||||||||||   ||||||||||||||||||||| ||| | |||| || |||||||||||||||| ||||||| | | |||  ||||||||| |||    
T  52458967 gatgataaatttttgagcacattattaagaacaaccaattttat-tatagga-gggtgtatatagaaatgtttgtgatacatggga-tatatatagcaaa 52458871  T
Q  376 tcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    |  |||||||||||  ||||||||||||||| ||||||| | || |||||||||||||    
T  52458870 ttgcgccaaaagggcaaaaaacattaacagatttcagcccagcccttcatcatgtcaa 52458813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 78 - 433
Target Start/End: Complemental strand, 52460423 - 52460070
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||||||  ||||||||||||||||||  |||||||||   |||||| ||||||||| ||||||| ||||| ||||| |||| |||      
T  52460423 ataatttatttttttggaatctttgaaagacaagattaaggttaatttctctggtaggcccattttcaactaaaatagaatttgttttg-ttatgaaaaa 52460325  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttc 275  Q
    ||||| ||||||||  |||||||||||||   |||||||||||||| | ||| |||| |||||| |||||| ||| |       || ||| ||||| |||    
T  52460324 tatcccaatttcttggataataaatatcatcgatatttttaatattagtgagacacattattaggaacaaagggcccaaaaaaatatcacaaatttcttc 52460225  T
Q  276 gatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaa 375  Q
    ||||||||||||||   ||||||||||||||||||||| ||| | |||| || |||||||||||||||| ||||||| | | |||  ||||||||| |||    
T  52460224 gatgataaatttttgagcacattattaagaacaaccaattttat-tatagga-gggtgtatatagaaatgtttgtgatacatggga-tatatatagcaaa 52460128  T
Q  376 tcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    |  |||||||||||  ||||||||||||||| ||||||| | || |||||||||||||    
T  52460127 ttgcgccaaaagggcaaaaaacattaacagatttcagcccagcccttcatcatgtcaa 52460070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 79 - 411
Target Start/End: Complemental strand, 10142292 - 10141960
Alignment:
Q  79 taatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagtt 177  Q
    ||||||| ||||||| ||| ||| ||||| |||||||| ||||||||||  ||||| | ||||||||| ||||||||||||| ||||| |||| ||| ||    
T  10142292 taatttatttttttgcaacctttaaaagataagattaagattaatttctctagtagacccattttcaagtaaaatataatttgttttg-ttatgaaaatt 10142194  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||| ||||| ||  |||||||||||||| ||||||||||||||| | || ||||| ||||||||||||| ||  |       || || |||||| ||||    
T  10142193 atcccaatttattggataataaatatcaccaatatttttaatattagtgaagcacattattagaaacaaagggtccaaaaaaatatcatcaatttcttcg 10142094  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    || |||| ||||||| |||||||||||||||||||||| |||| || | |  || ||||||||||||||||||||  ||||  | ||| |||||| ||||    
T  10142093 ataataatttttttggcacattattaagaacaaccaaactttt-taaagggtggatgtatatagaaatctttgtgctatacttgggtacatatagcaaat 10141995  T
Q  377 cacgccaaaagggtcaaaaacattaacagacttca 411  Q
    | |||||||||||| ||||| | ||||| ||||||    
T  10141994 cgcgccaaaagggtgaaaaataataacatacttca 10141960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 78 - 430
Target Start/End: Original strand, 29282965 - 29283313
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||||||||||  ||||  || || |||||||||||||||||||||||| |||||||| ||    
T  29282965 ataatttaattttttggaacctttgaaaaacaatattaagattaatttctctagtaaacttatattcaattaaaatataatttatttt-gttataaaatt 29283063  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||  ||||||||  ||||||||||| || ||||| ||||||||| | |||||||| ||||||||||||| ||| |       || ||  ||||| ||||    
T  29283064 atctcaatttcttggataataaatattaccaatatatttaatattagtgaggcacattattagaaacaaagggcccaaaataatatcataaatttattcg 29283163  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    || || ||||||||| |||||||||||||| |||||||   || |||| | ||||||||||||||||| |||||   ||| |||||||||||||| ||||    
T  29283164 ataat-aattttttggcacattattaagaaaaaccaaaacatt-tatagggagggtgtatatagaaatttttgt-ttataagggtgtatatatagcaaat 29283260  T
Q  377 cacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgt 430  Q
       | |||||||| | | ||| |||||||||||||||  | ||||||| |||||    
T  29283261 tgagacaaaaggg-ccataactttaacagacttcagcacagcctttcaacatgt 29283313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 78 - 472
Target Start/End: Original strand, 1843116 - 1843504
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||||||| || ||||||||||||||| ||||||||| |    ||||||||||||||  |||||||||||| |||| ||||| ||| |    
T  1843116 ataatttatttttttggaaccttagaaagacaagattaagattaatttcat----aggctcattttcaacaaaaatataatttgtttt-gttatgaaaat 1843210  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttc 275  Q
    ||||| ||||||||  ||||| |||||| | ||||||||||||||| | |||||||| |||||| |||||| ||| |       || | | ||||| | |    
T  1843211 tatcccaatttcttagataatgaatatctccaatatttttaatattagtgaggcacattattaggaacaaagggcccaaaaaaatatctctaatttctcc 1843310  T
Q  276 gatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaa 375  Q
     || |||| |||||||| | ||||||||||| ||||||  |||| |||| | | ||||||||||||||||||||||  |||   | |||||||||  |||    
T  1843311 cataataatttttttgatatattattaagaaaaaccaa--ttttttatagggatggtgtatatagaaatctttgtgttatataagagtatatataacaaa 1843408  T
Q  376 tcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaattttttctatatacaccc 472  Q
    ||  |||||||| ||| ||||||||||||||||| |||| | |||| |||||||| ||  ||| ||| |||| ||||||  ||||||||||| ||||    
T  1843409 tctagccaaaagagtctaaaacattaacagacttgagcccagccttccatcatgtaaatatttggggtctttcagtgaa-cttttctatataaaccc 1843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 273 - 447
Target Start/End: Complemental strand, 51758406 - 51758232
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatataga 372  Q
    |||||| |||||||||||| |||||||||||||||||| || ||||| |||| | |||||||||||||||||||||| |  | ||  | ||||||||||     
T  51758406 ttcgataataaattttttggcacattattaagaacaactaattttttttatagggagggtgtatatagaaatctttgcgctagaccagggtatatatagc 51758307  T
Q  373 aaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggccttt 447  Q
    ||||| |||||||||||  |||||||||||||||||||| || | || ||||| |||||||  ||| ||||||||    
T  51758306 aaatcgcgccaaaagggaaaaaaacattaacagacttcaacccatcccttcattatgtcaatgtttggggccttt 51758232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 274 - 447
Target Start/End: Complemental strand, 25200984 - 25200811
Alignment:
Q  274 tcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaa 373  Q
    ||||| |||| |||||||||||||| |||||||||| ||||||| | |||||| ||||||||||||||||| |||||   | | ||| ||||||||||||    
T  25200984 tcgataataatttttttgacacattgttaagaacaaacaaatttatttatatggagggtgtatatagaaatatttgttctacatgggggtatatatagaa 25200885  T
Q  374 aatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggccttt 447  Q
    |||  |  ||||| || ||||||||||||||||||| |||| |||  |||||||||||||| |||  |||||||    
T  25200884 aattgcctcaaaatggacaaaaacattaacagacttaagcccaactcttcatcatgtcaacatttgaggccttt 25200811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 42512194 - 42512329
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaat 185  Q
    ||||||| ||| |||||||||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||| |||| ||||| ||| |||||| |||    
T  42512194 ttttttgaaacctttgaaagacaagattaagattaatttctttagtaggttcattttcaactaaaatataatttgtttt-gttatgaaaattatcccaat 42512292  T
Q  186 ttcttcaataataaatatcactaatatttttaatatt 222  Q
    || ||  |||||||||||| | |||||||||||||||    
T  42512293 ttattggataataaatatccccaatatttttaatatt 42512329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 78 - 216
Target Start/End: Complemental strand, 21320162 - 21320025
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||||||| ||||||| | |||||||| |||||||| |  |||| || ||||||||| ||||||||||||| |||| |||||||| ||    
T  21320162 ataatttaattttttggaacctttgaaaaataagattaagattaatttatctagtaagcccattttcaactaaaatataatttgtttt-gttataaaatt 21320064  T
Q  178 atcctaatttcttcaataataaatatcactaatattttt 216  Q
    |||||||||| ||   ||||||||||||| | |||||||    
T  21320063 atcctaatttattggttaataaatatcaccattattttt 21320025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 414
Target Start/End: Original strand, 9921809 - 9922138
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||| | ||||| ||| || ||||||||||||||| ||||||||| |    |||||||||||||| ||||||||||||| ||||  |   ||| ||    
T  9921809 ataatttattattttgaaaccttagaaagacaagattaagattaatttcat----aggctcattttcaactaaaatataatttgttttattacgaaaatt 9921904  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||| ||||||||  |||||||||||||  ||||||||||||||| | ||| |||| |||||| | |||| ||  |       ||    |||||| | |     
T  9921905 atcccaatttcttggataataaatatcatcaatatttttaatattagtgagacacattattaggaccaaagggtccaaaaaaatatagtcaatttctccc 9922004  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    || |||| |||||   |||||||||||||| |||| ||||||| |||| | | ||||||||||||||||||||||  ||||| | |||||||||| |||     
T  9922005 ataataatttttt---cacattattaagaaaaacc-aatttttttatagggatggtgtatatagaaatctttgtgttatacgagggtatatatagcaaaa 9922100  T
Q  377 cacgccaaaagggtcaaaaacattaacagacttcagcc 414  Q
    | | | ||||||| | ||||||||||||||||| ||||    
T  9922101 ctcactaaaagggccgaaaacattaacagacttgagcc 9922138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 13957380 - 13957231
Alignment:
Q  98 atttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcctaatttcttcaataat 197  Q
    ||||||||||||||||||| |||| |||||  ||||||   |||||||| ||||||||||||| ||||| |   ||| |||||| ||||| ||  |||||    
T  13957380 atttgaaagacaagattaagattagtttctctagtaggtctattttcaactaaaatataatttgttttgttacgaaaattatcccaatttattggataat 13957281  T
Q  198 aaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
    ||||||||||||||||||| ||||| | || ||||| |||||| ||||||    
T  13957280 aaatatcactaatatttttcatattagtgaagcacattattaggaacaaa 13957231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 41509148 - 41509309
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||||||| ||||||| | |  ||||| ||||||||||  | |||||  |||||||| |||||||||||||  ||| |||||||| ||    
T  41509148 ataatttaattttttggaacctttgaaaaagaccattaagattaatttctctaataggcagattttcaactaaaatataattt-gtttagttataaaatt 41509246  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattag 240  Q
     ||  ||||||||  ||||||||||| || ||||||||||||||| | ||| |||| ||||||    
T  41509247 gtctcaatttcttggataataaatattaccaatatttttaatattagtgagacacattattag 41509309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 426
Target Start/End: Original strand, 10373325 - 10373672
Alignment:
Q  78 ataatttaatttttt-ggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagt 176  Q
    ||||||||||||||| ||||  ||| || |||||||||||||||||||| |  ||||||  ||||||||| ||||||||||||| ||||  ||||||| |    
T  10373325 ataatttaatttttttggaagctttaaatgacaagattaaaattaatttttctagtaggtccattttcaactaaaatataatttgtttta-ttataaaat 10373423  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttc 275  Q
    ||||  ||||||||  ||||| ||||| || ||||||||||||||| | |||| ||| |||| | || |||   | |       || ||||||||| ||     
T  10373424 tatctcaatttcttgtataatgaatatgaccaatatttttaatattagtgagggacattattcggaagaaagaac-ccaaaaaatatcaccaatttattt 10373522  T
Q  276 gatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaa 375  Q
    ||| |||| | ||||  |||||||||||||| ||  || ||||| |||| | |  || ||||||||||||||||| | ||| |||  ||||||||| |||    
T  10373523 gataataattgttttagcacattattaagaagaattaattttttttatagggaatgtctatatagaaatctttgt-agatatgggaatatatatagcaaa 10373621  T
Q  376 tcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatc 426  Q
    | |||  || |||| ||||||||||||||| |||||||| | |||||||||    
T  10373622 ttacgataatagggccaaaaacattaacaggcttcagcccagcctttcatc 10373672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 406
Target Start/End: Original strand, 7413795 - 7414024
Alignment:
Q  176 ttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-tt 274  Q
    |||||| ||||||||  ||||||||||||    |||||||||||||| | || ||||| |||||| |||||| ||| |       || ||||||||| ||    
T  7413795 ttatcccaatttcttggataataaatatcgtcgatatttttaatattagtgaagcacattattaggaacaaagggcccaaaaaaatagcaccaatttctt 7413894  T
Q  275 cgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaa 374  Q
    ||||  ||||||||||  || ||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||||  ||| |||  ||||||||| ||    
T  7413895 cgatagtaaattttttagcatattatgaagaacaaccaaatttttttataag-agggtgtatatagaaatatttgtgttatatggg-atatatatagcaa 7413992  T
Q  375 atcacgccaaaagggtcaaaaacattaacaga 406  Q
    ||| | | ||||||| |||||| | |||||||    
T  7413993 atctcactaaaagggccaaaaatactaacaga 7414024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 406
Target Start/End: Original strand, 7459876 - 7460105
Alignment:
Q  176 ttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-tt 274  Q
    |||||| ||||||||  ||||||||||||    |||||||||||||| | || ||||| |||||| |||||| ||| |       || ||||||||| ||    
T  7459876 ttatcccaatttcttggataataaatatcgtcgatatttttaatattagtgaagcacattattaggaacaaagggcccaaaaaaatagcaccaatttctt 7459975  T
Q  275 cgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaa 374  Q
    ||||  ||||||||||  || ||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||||  ||| |||  ||||||||| ||    
T  7459976 cgatagtaaattttttagcatattatgaagaacaaccaaatttttttataag-agggtgtatatagaaatatttgtgttatatggg-atatatatagcaa 7460073  T
Q  375 atcacgccaaaagggtcaaaaacattaacaga 406  Q
    ||| | | ||||||| |||||| | |||||||    
T  7460074 atctcactaaaagggccaaaaatactaacaga 7460105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 51891001 - 51891097
Alignment:
Q  332 tgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcat 428  Q
    ||||||||||||| ||||||  |||||   ||| ||||||||||||  |||||||||| |||||||||||| ||||||||||| |||| ||||||||    
T  51891001 tgtatatagaaatatttgtgctatacgacggtacatatagaaaatcgtgccaaaagggccaaaaacattaatagacttcagcccaacccttcatcat 51891097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 51337762 - 51337648
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcac 206  Q
    ||||||||| |||||||||| | |||||| ||||||||| ||||||||||||| |||| ||||| ||| || ||| ||||| ||  ||||||||||||||    
T  51337762 caagattaagattaatttctccggtaggcccattttcaactaaaatataatttgtttt-gttatgaaaattctcccaattttttggataataaatatcac 51337664  T
Q  207 taatatttttaatatt 222  Q
      ||||||||||||||    
T  51337663 atatatttttaatatt 51337648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 22594232 - 22594154
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||| |||||||||| | |||||||||||||| |||||| ||||| |||| | | ||||||||||||||||||||||    
T  22594232 ttcgataataaatttttaggcacattattaagaaaaaccaattttttttataaggaaggtgtatatagaaatctttgtg 22594154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 24611307 - 24611430
Alignment:
Q  80 aatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagtta 178  Q
    |||||| ||||||||||  ||||||||||||||||||  ||||||| |  |||||||  |||||||| ||||||| ||||| |||| ||||| ||| |||    
T  24611307 aatttatttttttggaatctttgaaagacaagattaaggttaatttttctagtaggccaattttcaactaaaatagaatttgtttt-gttatgaaaatta 24611405  T
Q  179 tcctaatttcttcaataataaatat 203  Q
    ||  ||||||||  |||||||||||    
T  24611406 tctcaatttcttggataataaatat 24611430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 51890407 - 51890474
Alignment:
Q  99 tttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttg 166  Q
    |||||||||||||| ||| ||||||||||  ||||||   |||||||| |||||||||||||||||||    
T  51890407 tttgaaagacaagaataagattaatttctatagtaggtctattttcaactaaaatataatttattttg 51890474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 51890681 - 51890748
Alignment:
Q  99 tttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttg 166  Q
    |||||||||||||| ||| ||||||||||  ||||||   |||||||| |||||||||||||||||||    
T  51890681 tttgaaagacaagaataagattaatttctatagtaggtctattttcaactaaaatataatttattttg 51890748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 3665451 - 3665544
Alignment:
Q  112 attaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatca 205  Q
    ||||| ||||||||||  | ||||||||||||||| ||||||| ||||| |||| ||||| ||| |||||  |||||||| ||||||||||||||    
T  3665451 attaagattaatttctctaataggctcattttcaactaaaatagaatttgtttt-gttatgaaaattatctcaatttcttgaataataaatatca 3665544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 351
Target Start/End: Original strand, 10095037 - 10095249
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    |||||||||||||||| |||||  |||| |||| ||| |||||| ||||||||  ||||||||||||   |||||||||||||||   || ||||| |||    
T  10095037 attttcaattaaaatagaatttgctttg-ttatgaaaattatcccaatttcttggataataaatatcgtcaatatttttaatattaatgaagcacattat 10095135  T
Q  238 tagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtat 336  Q
    ||| ||||||  || |       || ||||||||| |||||| ||| ||||||   || || || |||||||||||||||||| |||| | |||||| ||    
T  10095136 taggaacaaagagcccaaaaaaatatcaccaatttcttcgataatacatttttgagcatataatcaagaacaaccaaatttttttata-ggagggtgcat 10095234  T
Q  337 atagaaatctttgtg 351  Q
    |||||||| ||||||    
T  10095235 atagaaatatttgtg 10095249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 25201160 - 25201111
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttct 127  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||| ||||    
T  25201160 ataatttatttttttggaacttttgaaagacaagattaagattaaattct 25201111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 52459252 - 52459208
Alignment:
Q  35 aatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||    
T  52459252 aatgtgtttcacatgatcttgcattatcaaattcaattctgcaat 52459208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 52460509 - 52460465
Alignment:
Q  35 aatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||    
T  52460509 aatgtgtttcacatgatcttgcattatcaaattcaattctgcaat 52460465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 454
Target Start/End: Original strand, 55520233 - 55520355
Alignment:
Q  330 ggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatg 429  Q
    ||||||||||||||||||||| | |||||||  |||| |||||||||     |||||||| |||||| |||||||  |||||| | |  |||||||||||    
T  55520233 ggtgtatatagaaatctttgt-atatacggggatatacatagaaaattgaaacaaaagggccaaaaatattaacaagcttcagtccagtctttcatcatg 55520331  T
Q  430 tcaactttttgggcctttaagtgaa 454  Q
    |||| | ||||||||||| ||||||    
T  55520332 tcaa-tgtttgggcctttcagtgaa 55520355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 6830674 - 6830723
Alignment:
Q  25 catgatcctgaatgtgtttcacatgattctgcattatcaaattcaatttt 74  Q
    ||||||||| |||| || |||||||||  |||||||||||||||||||||    
T  6830674 catgatcctaaatgcgtctcacatgatcttgcattatcaaattcaatttt 6830723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 20152554 - 20152638
Alignment:
Q  328 agggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagc 413  Q
    ||||||| ||||||||||| |||  |||| |||||||||||||| ||||| | |||||| || | |||| ||||| ||||||||||    
T  20152554 agggtgtttatagaaatctatgtttaatatgggtgtatatatagcaaatcgcaccaaaaagg-ccaaaagattaatagacttcagc 20152638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 23935836 - 23935893
Alignment:
Q  183 aatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattag 240  Q
    ||||||||  |||||||||||||| |||||| |||||||| | |||||||| ||||||    
T  23935836 aatttcttggataataaatatcaccaatattattaatattagtgaggcacattattag 23935893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 86 - 414
Target Start/End: Complemental strand, 12027929 - 12027600
Alignment:
Q  86 attttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaa 184  Q
    ||||||| |||| |||||||||||| ||||| ||||||||||  | ||||  ||||||||| |||||| |||||| ||||| |||| ||| | |||  ||    
T  12027929 atttttttgaacctttgaaagacaatattaagattaatttctctaataggtccattttcaactaaaatctaatttgttttg-ttatgaaaatcatcaaaa 12027831  T
Q  185 tttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataa 283  Q
    ||| ||| | |||||||||||| ||||||||||||||| | || ||||| |||||| |||||| |||         || ||||||||| |||||| ||||    
T  12027830 tttattcgaaaataaatatcaccaatatttttaatattagtgaagcacattattaggaacaaagggcctaaaaaaatatcaccaatttattcgataataa 12027731  T
Q  284 atttttt-gacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgcc 382  Q
    ||||||| | || |||||||||||||||||  ||||| |||| | | ||||||||||||||| |||||   ||||| | ||| ||||||||||||||| |    
T  12027730 atttttttggcatattattaagaacaaccattttttt-tatagggacggtgtatatagaaatgtttgtattatacgagggtacatatagaaaatcacgtc 12027632  T
Q  383 aaaagggtcaaaaacattaacagacttcagcc 414  Q
    ||||||| |||||||||||||| |||||||||    
T  12027631 aaaagggccaaaaacattaacatacttcagcc 12027600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 24185619 - 24185760
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||||||| | |||||||||||||||| ||||||||    ||||| | ||||||||| ||||||||||||| |||| |||||||| ||    
T  24185619 ataatttaattttttggaacttctgaaagacaagattaagattaattttgctagtagacccattttcaactaaaatataatttgtttt-gttataaaatt 24185717  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaata 220  Q
    |||| ||||||||  | |||||||||||| |||||||||||||    
T  24185718 atcccaatttcttggacaataaatatcaccaatatttttaata 24185760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 280 - 433
Target Start/End: Original strand, 47397688 - 47397841
Alignment:
Q  280 ataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcac 379  Q
    |||||||||||| || ||||||||||| |||||| ||||| |||| | | ||||| |||||||||||||||    || ||| |||||||||| |||| ||    
T  47397688 ataaattttttggcaaattattaagaataaccaattttttttataaggaaggtgtttatagaaatctttgtactgtatgggggtatatatagtaaataac 47397787  T
Q  380 gccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    |||||||| | |||||||||| ||||||||||||||| || |||||||||||||    
T  47397788 gccaaaagagccaaaaacattgacagacttcagcctagcccttcatcatgtcaa 47397841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 5509809 - 5509953
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    ||||||||| |||||||||  |||||||||||||||||| |||||||| |  ||||||| ||||||||  ||||||| |||||||||| ||||| ||| |    
T  5509809 ataatttaaatttttggaatctttgaaagacaagattaagattaatttatctagtaggcacattttcatctaaaatagaatttatttt-gttatgaaaat 5509907  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatatt 222  Q
    ||||| ||||||||  |||||||||||  | |||||||||||||||    
T  5509908 tatcccaatttcttggataataaatatggccaatatttttaatatt 5509953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 47559506 - 47559642
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||| ||| |||||||||||| ||||| ||||||||||  |||| || |||||| || ||||||||||||| |||| |||||||| ||    
T  47559506 ataatttaattttttgaaac-tttgaaagacaatattaagattaatttctctagtaagcacatttttaactaaaatataatttgtttt-gttataaaatt 47559603  T
Q  178 atcctaatttcttcaataataaatatcactaatattttt 216  Q
    |||| ||||| ||  |||||||||||||| |||| ||||    
T  47559604 atcccaatttttttgataataaatatcaccaatactttt 47559642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 36296812 - 36296674
Alignment:
Q  109 aagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcact 207  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||||||||||  ||||||||| ||| || ||| ||||| ||  ||||||||||||||     
T  36296812 aagattaagattaatttcttcagtaggcccattttcaactaaaatataattt-gtttggttatgaaaattctcccaattttttggataataaatatcaca 36296714  T
Q  208 aatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     |||||||||||||| |  || |||| |||||| ||||||    
T  36296713 tatatttttaatattagtaagacacattattaggaacaaa 36296674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 5209643 - 5209776
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaat 185  Q
    ||||||| ||| ||||||| |||||||||| ||||||||||| ||||||   |||||||| ||||||||||||| |||| ||||| ||| |||||| |||    
T  5209643 ttttttgaaacctttgaaaaacaagattaagattaatttctttagtaggtatattttcaactaaaatataatttgtttt-gttatgaaaattatcccaat 5209741  T
Q  186 ttcttcaataataaatatcactaatatttttaata 220  Q
    || ||  |||||||||||||| ||||| |||||||    
T  5209742 ttattggataataaatatcaccaatatgtttaata 5209776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 42722347 - 42722209
Alignment:
Q  109 aagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcact 207  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||||||||||  ||||||||| ||| || ||| ||||| ||  ||||||||||||||     
T  42722347 aagattaagattaatttcttcagtaggcccattttcaactaaaatataattt-gtttggttatgaaaattctcccaattttttggataataaatatcaca 42722249  T
Q  208 aatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
      ||||||||||||| |  || |||| |||||| ||||||    
T  42722248 tgtatttttaatattagtaagacacattattaggaacaaa 42722209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 351
Target Start/End: Original strand, 17967339 - 17967551
Alignment:
Q  139 attttcaattaaaatataatttattttggttataaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatatt 238  Q
    |||||||| ||||||| |||||  |||| |   ||| |||||| ||||||||  ||||||||||||    |||||||||||||| | || ||||| ||||    
T  17967339 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttcttggataataaatatcgtcgatatttttaatattagtgaagcacattatt 17967438  T
Q  239 agaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtata 337  Q
    || |||||| ||| |       || ||||||||| |||||| |||||||||||  || ||||| |||||||||||| ||||| |||| | ||||||||||    
T  17967439 aggaacaaagggcccaaaaaaatagcaccaatttcttcgataataaattttttagcatattatcaagaacaaccaattttttttata-ggagggtgtata 17967537  T
Q  338 tagaaatctttgtg 351  Q
    ||||||| ||||||    
T  17967538 tagaaatttttgtg 17967551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 136 - 414
Target Start/End: Complemental strand, 25095257 - 25094980
Alignment:
Q  136 ctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaa 234  Q
    ||||||||||| ||||||| |||||  |||| |||| ||| |||||| ||||||||  |||||||||| |   ||||||||||||||| | || |||||     
T  25095257 ctcattttcaactaaaatagaatttgctttg-ttatgaaaattatcccaatttcttggataataaataccgtcaatatttttaatattagtgaagcacat 25095159  T
Q  235 tattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtg 333  Q
    |||||| |||||| ||| |       || ||||||||| ||||||||||||||||    || |||||||||| ||||||| ||||| |||| || |||||    
T  25095158 tattaggaacaaagggcccaaaaaaatatcaccaatttcttcgatgataaattttcgagcatattattaagatcaaccaattttttttatagga-gggtg 25095060  T
Q  334 tatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcc 414  Q
    |||||| |||| ||||||    | |||  ||||||||| ||||| | | |||| || |||||||||||||||| |||||||    
T  25095059 tatatataaatatttgtgctgcatggg-atatatatagcaaatctctctaaaaaggccaaaaacattaacagatttcagcc 25094980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 41665742 - 41665592
Alignment:
Q  88 tttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcctaattt 187  Q
    ||||| ||||||| ||||||||||||||||| |||||| |  ||||| | ||||||||| |||||||||||||| |||| |   |||||| | | |||||    
T  41665742 tttttagaacattcgaaagacaagattaaaactaatttatctagtagacacattttcaactaaaatataatttactttgttaggaaagtttttccaattt 41665643  T
Q  188 cttcaataataaatatcactaatatttttaatattggcgaggcacaatatta 239  Q
    |||  |||||||||||||  ||| |||||| |||| | |||||||| |||||    
T  41665642 cttagataataaatatcatcaat-tttttagtattagtgaggcacattatta 41665592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 49229349 - 49229435
Alignment:
Q  136 ctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatatt 222  Q
    ||||||||||| |||||||||||||||||| ||||| ||| |||||| ||||||||  |||||||||||||  |||||||||||||||    
T  49229349 ctcattttcaactaaaatataatttatttt-gttatgaaaattatcccaatttcttggataataaatatcatcaatatttttaatatt 49229435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 9023363 - 9023202
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||| ||||||||||  ||| ||||||||||||    |||||||||  ||||| ||||||||||| ||||||| ||||| ||||| |  ||||  |    
T  9023363 ataatttatttttttggaatctttaaaagacaagattttggttaatttctctagtagactcattttcaactaaaatagaatttgttttgttattaaaact 9023264  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatatta 239  Q
    |||| ||||  ||  |||||||||||||   |||||||||||||| | |||||||| |||||    
T  9023263 atcccaattatttggataataaatatcatcgatatttttaatattagtgaggcacattatta 9023202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 44310625 - 44310579
Alignment:
Q  33 tgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||    
T  44310625 tgaatgtgtttcacatgatcttgcattatcaaattcaattatgcaat 44310579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 48646232 - 48646138
Alignment:
Q  150 aaatataatttattttggttataaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaac 244  Q
    ||||||||||| ||||| ||  ||| |||||| ||||| ||  |||||||||||||| ||||||||||||||  | |||||||| ||||| ||||    
T  48646232 aaatataatttgttttgttttgaaaattatcccaatttattggataataaatatcaccaatatttttaatatcagtgaggcacattattataaac 48646138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 285 - 433
Target Start/End: Original strand, 12784130 - 12784278
Alignment:
Q  285 ttttttgacacattattaagaacaaccaaat-ttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgcca 383  Q
    ||||||||||||||||||||  ||||||||| |||| || |   || ||||||||| |||| ||| ||| |||| || |||||||||| | |||    ||    
T  12784130 ttttttgacacattattaagt-caaccaaatcttttatagagagagtgtgtatatataaatatttttgatatacaggagtatatatagcatatcgtatca 12784228  T
Q  384 aaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    |||||| ||||||||||||||  ||||| || |||| |||||||||||||    
T  12784229 aaagggccaaaaacattaacaagcttcaacccaacccttcatcatgtcaa 12784278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 343
Target Start/End: Original strand, 34307461 - 34307665
Alignment:
Q  139 attttcaattaaaatataatttattttggttataaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatatt 238  Q
    |||||||| ||||||| |||||  |||| |   ||| |||||| |||||||| |||||||||||||    |||||||||||||| | || ||||| ||||    
T  34307461 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttcttgaataataaatatcgtcgatatttttaatattagtgaagcacattatt 34307560  T
Q  239 agaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtata 337  Q
    || |  ||| ||| |       || ||||||||| |||||| ||||||||||   || ||||| |||||||||||| ||||| |||| | ||||||||||    
T  34307561 aggagtaaagggcccaaaaaaatatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaattttttttata-ggagggtgtata 34307659  T
Q  338 tagaaa 343  Q
    ||||||    
T  34307660 tagaaa 34307665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 247
Target Start/End: Original strand, 47397490 - 47397650
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttc-agtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaa 184  Q
    ||||||||||| |||||||||||||||||| ||||||||  ||   ||||  ||||||||| ||| ||||||||   ||   |||| ||| |||||| ||    
T  47397490 ttttttggaacctttgaaagacaagattaagattaattttatctcataggtccattttcaactaagatataatt--gttccattatgaaaattatccgaa 47397587  T
Q  185 tttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
    ||||||  |||||||||||||   |||||||||||||| | || ||||| |||||| ||||||    
T  47397588 tttcttggataataaatatcatcgatatttttaatattagtgatgcacattattaggaacaaa 47397650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 351
Target Start/End: Complemental strand, 22070522 - 22070380
Alignment:
Q  209 atatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaac 307  Q
    |||||||||||||| | || ||||| |||||| |||||| ||| |       || ||||||||| |||||| ||||||||||    | ||||| ||||||    
T  22070522 atatttttaatattagtgaagcacattattaggaacaaagggcccaaaaaaatatcaccaatttcttcgataataaatttttgagtatattatcaagaac 22070423  T
Q  308 aaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||||||||| |||| | ||| ||||||||||||| ||||||    
T  22070422 aaccaaatttttttata-ggaggatgtatatagaaatttttgtg 22070380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 24185523 - 24185577
Alignment:
Q  25 catgatcctgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    ||||||| |||||| |||| |||||||| || |||||||||||||||||| ||||    
T  24185523 catgatcatgaatgcgttttacatgattttgtattatcaaattcaattttacaat 24185577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 48645992 - 48645951
Alignment:
Q  392 aaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||    
T  48645992 aaaaatattaacagacttcagcccaacttttcatcatgtcaa 48645951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 5049419 - 5049340
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaa 343  Q
    ||||||||| |||||| ||||||||||   || ||||| |||||||||||| ||||| |||| | ||||||||||||||||    
T  5049419 caccaatttcttcgataataaatttttgagcatattatcaagaacaaccaattttttttata-ggagggtgtatatagaaa 5049340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 21906343 - 21906264
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaa 343  Q
    ||||||||| |||||| |||||||||    || ||||| ||||||||||||||| || |||||| ||||||||||||||||    
T  21906343 caccaatttcttcgataataaattttggagcatattatcaagaacaaccaaattcttttatatg-agggtgtatatagaaa 21906264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 48999367 - 48999290
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaa 343  Q
    ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||||| |||| | ||||||||||||||||    
T  48999367 caccaatttcttcgataataaatttttag-catattatcaagaacaaccaaattttt-tata-ggagggtgtatatagaaa 48999290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 78 - 473
Target Start/End: Complemental strand, 1424843 - 1424457
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||||||| ||||| |||||| ||||| ||||||||||  |||||||  |||||||| |||||||||  || |||| |||||||| ||    
T  1424843 ataatttaattttttggaacctttgatagacaacattaagattaatttctctagtaggcctattttcaactaaaatata--ttttttttgttataaaatt 1424746  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||| ||||||||  ||||||||||  |||||||  | ||||||| | |||||||| |||||| ||| ||||| ||       || ||  ||||| || |    
T  1424745 atcccaatttcttggataataaatacgactaata--tataatattagtgaggcacattattaggaac-aaagggtcccaaaaatatcataaatttctttg 1424649  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    || |||| ||||||| |||||| ||||||| |||| ||||||| |||  | ||||||||||||||||||||||| | ||||| | |||||||||| ||||    
T  1424648 ataataatttttttggcacatttttaagaaaaacc-aatttttttatggggagggtgtatatagaaatctttgt-atatacgagggtatatatagcaaat 1424551  T
Q  377 cacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaattttttctatatacacccc 473  Q
       | || ||||| ||||| ||| |||||||||||||  | |||||||||||||||| | ||||||||||| ||||||  ||| |||||||||||||    
T  1424550 tgagacagaaggg-caaaatcatcaacagacttcagctcagcctttcatcatgtcaa-tgtttgggccttttagtgaa-ctttactatatacacccc 1424457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 87 - 386
Target Start/End: Complemental strand, 47185106 - 47184807
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaat 185  Q
    ||||||||||| |||||||||||||||||| ||||||||||  ||| ||  ||||||||| ||||||||||||| ||||| |||| ||| |||||| |||    
T  47185106 ttttttggaacctttgaaagacaagattaagattaatttctctagtgggtccattttcaactaaaatataatttgttttg-ttatgaaaattatcccaat 47185008  T
Q  186 ttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaa 284  Q
    || ||  |||||||||||||| ||||||| ||||||| | || | ||| |||||| || ||| ||| |       || ||||||||| |||||| || ||    
T  47185007 ttattggataataaatatcaccaatatttgtaatattagtgaagaacattattaggaagaaagggcccaaataaatatcaccaatttcttcgataat-aa 47184909  T
Q  285 ttttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaa 384  Q
    |||||||  |||||||||| |||||||||||| || |||| ||||||||||| |||||||||| |||  ||||||| ||| |||||| ||||  ||||||    
T  47184908 ttttttggtacattattaaaaacaaccaaattattttataggaagggtgtatgtagaaatcttcgtgctatacgggggtacatatagcaaattgcgccaa 47184809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 102 - 430
Target Start/End: Original strand, 10993054 - 10993375
Alignment:
Q  102 gaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaa 200  Q
    ||||||||||| |||||||||||||    |||||||||||||||| ||||||  ||||| |||| ||||| ||| |||||| ||||||||  ||||||||    
T  10993054 gaaagacaagaataaaattaatttc----gtaggctcattttcaactaaaatgaaatttgtttt-gttatgaaaattatccaaatttcttggataataaa 10993148  T
Q  201 tatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacatta 299  Q
    |||||| ||||||||||||||| | |||||||| |||||| ||||||||||         || | ||||||| ||| || ||||||||||||  ||||||    
T  10993149 tatcaccaatatttttaatattagtgaggcacattattaggaacaaaaggcctaaaaaaatatctccaatttattctataataaattttttg-gacatta 10993247  T
Q  300 ttaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgccaaaagggtcaaaaacat 399  Q
    ||||||| |||| ||||||| |||| | ||||||||||||||||  ||||||  ||| |   |||||||| ||||||| ||||||||||| | ||| |||    
T  10993248 ttaagaaaaacc-aatttttttatagggagggtgtatatagaaa--tttgtgttatatgatggtatatatggaaaatctcgccaaaagggcctaaagcat 10993344  T
Q  400 taacagacttcagcctaacctttcatcatgt 430  Q
    ||||| || | |||| |||| ||||||||||    
T  10993345 taacatacgtgagcccaacccttcatcatgt 10993375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 29713952 - 29713787
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| |||||||||||  | ||||||||||||||| |||||||||    |||||||||||||||| ||||||||||||| ||||| |||| ||| |    
T  29713952 ataatttatttttttggaaccatagaaagacaagattaagattaatttc----gtaggctcattttcaactaaaatataatttgttttg-ttatgaaaat 29713858  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
    ||||| ||||||||  |||||||||||||| ||||||||||||||| | |||||||| |||||| ||||||    
T  29713857 tatcccaatttcttagataataaatatcaccaatatttttaatattagtgaggcacattattagtaacaaa 29713787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 30191123 - 30191267
Alignment:
Q  78 ataatttaatttt-ttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagt 176  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||||||||  |||||||  |||||||| ||||||||||||| |||| |||||||| |    
T  30191123 ataatttaatttttttggaacatttgaaagacaacattaagattaatttctctagtaggcctattttcaactaaaatataatttctttt-gttataaaat 30191221  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatatt 222  Q
    ||||  ||||| ||  ||||||||||| |||||||| |||||||||    
T  30191222 tatctcaattttttggataataaatatgactaatatatttaatatt 30191267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 87 - 447
Target Start/End: Complemental strand, 12893191 - 12892831
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaag-ttatcctaat 185  Q
    |||||||||| |||||||||| |||||||||||||||||||  ||||||  ||||||||| ||||||| ||| | ||||  |||||||  |||||  |||    
T  12893191 ttttttggaatatttgaaagataagattaaaattaatttctctagtaggtccattttcaactaaaatagaatatgttttc-ttataaaaattatctcaat 12893093  T
Q  186 ttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattag--aaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgata 282  Q
    |||||  |||||||| ||||| ||||| ||||||||| | |||||||  | ||||  ||| ||||||| |       |||||  ||||| || ||| | |    
T  12893092 ttcttggataataaacatcaccaatatatttaatattagtgaggcacgttcttaggaaaaaaaaaggc-ccaaaaaataccattaatttatttgataaca 12892994  T
Q  283 aattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcacgcc 382  Q
    | | ||||| ||||||||||||||||||||  ||||| |||| | ||||||| ||||||||||||||||  ||||||  |||| ||||| ||||  || |    
T  12892993 actgttttggcacattattaagaacaaccattttttt-tatagggagggtgtgtatagaaatctttgtgctatacggaggtatgtatagcaaatagcgtc 12892895  T
Q  383 aaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggccttt 447  Q
    ||||||| |||||||||||||||| ||||||  | || |||||||||||||  | ||||||||||    
T  12892894 aaaaggg-caaaaacattaacagatttcagctcagcccttcatcatgtcaatatgttgggccttt 12892831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 78 - 433
Target Start/End: Complemental strand, 1698569 - 1698215
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||| ||| ||||||  ||| |||||||||||||| |||||||| |  ||||  |  |||||||| | ||||| ||||| ||||| |   ||| ||    
T  1698569 ataatttattttcttggaatctttcaaagacaagattaagattaatttatctagtaaacctattttcaacttaaatagaatttgttttgttaggaaaatt 1698470  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcg 276  Q
    |||  ||||||||  |||||||||||||   |||||||||||||| | || ||||| ||||||||||||| | | |       || ||| ||||| ||||    
T  1698469 atctcaatttcttggataataaatatcatcgatatttttaatattagtgaagcacattattagaaacaaaggccccaaaaaaatatcactaatttcttcg 1698370  T
Q  277 atgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaat 376  Q
    || ||||||| |||  || |||||||| ||||||||| ||||| |||| || | |||||||||||| | ||||||  | | ||| |||||||||| ||||    
T  1698369 ataataaattctttagcatattattaataacaaccaattttttttatagga-gagtgtatatagaattttttgtgctacatggg-gtatatataggaaat 1698272  T
Q  377 cacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaa 433  Q
    | | ||| ||||| |||| ||||||||||| ||||||| | ||||||||||||||||    
T  1698271 cgcaccagaagggccaaatacattaacagatttcagcccagcctttcatcatgtcaa 1698215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 86 - 314
Target Start/End: Complemental strand, 53472263 - 53472036
Alignment:
Q  86 attttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcctaat 185  Q
    |||||||||||| ||||||| ||| |||||| |||||||| |  ||||||||||||||||| ||||||||||||| ||||| |  |||| |||||  |||    
T  53472263 attttttggaacctttgaaatacatgattaagattaatttatgtagtaggctcattttcaactaaaatataatttgttttgttattaaaattatctcaat 53472164  T
Q  186 ttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaa 284  Q
    |||||  ||||||||| |||| ||| |||||||||   | ||||  || |||||| |||||| |||||       || ||| ||||| ||||||||||||    
T  53472163 ttcttggataataaatttcaccaat-tttttaatacgagtgaggtgcattattaggaacaaatggctc-aaaaaatatcactaatttgttcgatgataaa 53472066  T
Q  285 ttttttgacacattattaagaacaaccaaa 314  Q
     ||||||| |||||||||||||||||||||    
T  53472065 atttttgatacattattaagaacaaccaaa 53472036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 16876830 - 16876996
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    |||||||||||||||| ||||||| |||||||| ||||| ||||||||||  ||| | || |||||||| |||||||| |||| |||| |||||||| ||    
T  16876830 ataatttaattttttgcaacattttaaagacaacattaagattaatttctctagttgacttattttcaactaaaatattatttgtttt-gttataaaatt 16876928  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     ||  ||||||||  ||||||||||| || ||||| ||||||||| || || |||| |||||||||||||    
T  16876929 ctc--aatttcttggataataaatatgaccaatatatttaatattagcaagacacattattagaaacaaa 16876996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 246
Target Start/End: Original strand, 44663291 - 44663446
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagttatcctaatt 186  Q
    ||||||| ||| || ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||||| ||||| ||  ||| ||||   ||||    
T  44663291 ttttttgtaaccttagaaagacaagattaaaaataatttt----gtaggctcattttcaactaaaatataatttgttttgttttgaaaattatttcaatt 44663386  T
Q  187 tcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaa 246  Q
    ||||  |||||||||||||| ||||| ||||||||| | |||||||| |||||| |||||    
T  44663387 tcttggataataaatatcaccaatatatttaatattagtgaggcacattattaggaacaa 44663446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 11639946 - 11640090
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||||||  |||||||||| | |||||  |||||||||  ||||||  ||||||||| ||||||| |||||||||| ||||| ||| |    
T  11639946 ataatttatttttttggaatctttgaaagactatattaaggttaatttctcaagtaggtccattttcaactaaaataaaatttatttt-gttatgaaaat 11640044  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatatt 222  Q
    ||||| |||||||| ||||||||||||||   ||||||||||||||    
T  11640045 tatcccaatttcttgaataataaatatcatcgatatttttaatatt 11640090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 490
Target Start/End: Complemental strand, 17147202 - 17147001
Alignment:
Q  280 ataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatatagaaaatcac 379  Q
    |||| ||||||| |||||||||| ||| |||||| ||||| |||| | ||||| ||||    ||| ||||||| ||| |||  ||||||||||||||  |    
T  17147202 ataatttttttggcacattattaggaaaaaccaatttttt-tatagggagggtatata----aatatttgtgatatatggggctatatatagaaaatatc 17147108  T
Q  380 gccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaattttttctatatacacccctccaaa 479  Q
     |||||||||  |||||||||||||   ||||||| |||||||||||||| |||  ||| || |||||||||||||||| | |||||| |||   |||||    
T  17147107 accaaaagggcgaaaaacattaacaagtttcagcccaacctttcatcatgccaatgtttgggacctttaagtgaattttgt-tatatatacc---ccaaa 17147012  T
Q  480 aaacaaaatat 490  Q
    |||||||||||    
T  17147011 aaacaaaatat 17147001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 139 - 351
Target Start/End: Original strand, 10994164 - 10994376
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    |||||||| |||||||||||||  |||| |||| ||| |||||| ||||||||  ||||||||||||    |||||||||||||| |||| ||||| |||    
T  10994164 attttcaactaaaatataatttgctttg-ttatgaaaattatcccaatttcttggataataaatatcgtcgatatttttaatattagcgaagcacattat 10994262  T
Q  238 tagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtat 336  Q
    ||| |||||| ||| |       || ||||||||| |||||| ||||||||||   |  ||||  |||||||||||||||||| |||| | |||||||||    
T  10994263 taggaacaaagggcccaaaaaaatatcaccaatttcttcgataataaatttttgagcgtattaccaagaacaaccaaatttttttata-ggagggtgtat 10994361  T
Q  337 atagaaatctttgtg 351  Q
    |||||||| ||||||    
T  10994362 atagaaatttttgtg 10994376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 351
Target Start/End: Complemental strand, 19157182 - 19156970
Alignment:
Q  139 attttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatat 237  Q
    |||||||| ||||||| ||||| ||||| |||| ||| ||||||| |||||||  ||||||||||||    ||||||||||||||   || ||||| |||    
T  19157182 attttcaactaaaatagaatttgttttg-ttatgaaaattatcctcatttcttggataataaatatcgtcgatatttttaatattaatgaagcacattat 19157084  T
Q  238 tagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtat 336  Q
    ||| |||||| ||| |       || || |||||| |||||| ||||||||||   || ||||| |||||||||||||||||| |||| | |||||||||    
T  19157083 taggaacaaagggcccaaaaaaatatcatcaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttata-ggagggtgtat 19156985  T
Q  337 atagaaatctttgtg 351  Q
    |||||||| ||||||    
T  19156984 atagaaatatttgtg 19156970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 23044880 - 23044994
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcac 206  Q
    ||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| |||| ||||| ||| || ||| |||||  |  ||||||||||||||    
T  23044880 caagattaagattaatttctccagtaggcccattttcaactaaaatataatttgtttt-gttatgaaaattctcccaattttctggataataaatatcac 23044978  T
Q  207 taatatttttaatatt 222  Q
      || |||||||||||    
T  23044979 atatctttttaatatt 23044994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 17147296 - 17147224
Alignment:
Q  149 aaaatataatttattttggttataaagttatcctaatttcttcaataataaatatcactaatatttttaatatt 222  Q
    |||||||||||||||||| |||| || |||| | ||||||||  |||||||||||||| |||||||||||||||    
T  17147296 aaaatataatttattttg-ttatgaaattattccaatttcttggataataaatatcaccaatatttttaatatt 17147224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 40145613 - 40145447
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 177  Q
    ||||||||||| |||||||||||| ||| |||| ||||| |||||||| |  | ||| || ||||| || ||||||||||||| |||| |||||||| ||    
T  40145613 ataatttaattctttggaacatttaaaaaacaacattaagattaatttttctattagacttattttgaactaaaatataatttgtttt-gttataaaatt 40145515  T
Q  178 atcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     ||| || |||||  ||||||||||| |  ||| | |||||| || | |||||||| |||||||||||||    
T  40145514 -tcc-aaattcttggataataaatatgaacaatgtatttaatgttagtgaggcacattattagaaacaaa 40145447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 247
Target Start/End: Original strand, 31884940 - 31885079
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcac 206  Q
    ||||||||| ||||||||||  |||| || ||||||||| |||||||||||||||||| ||||| | | || ||| |||||  |  ||||||||||||||    
T  31884940 caagattaagattaatttctctagtatgcccattttcaactaaaatataatttatttt-gttatgagaattttcccaattttctggataataaatatcac 31885038  T
Q  207 taatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
      |||||||||||||| |  || |||| |||||| ||||||    
T  31885039 atatatttttaatattagtaagacacattattaggaacaaa 31885079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 11830348 - 11830402
Alignment:
Q  25 catgatcctgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    ||||||| ||||||||| ||||| ||||  |||||||||||||||||||||||||    
T  11830348 catgatcatgaatgtgtctcacaagatttagcattatcaaattcaattttgcaat 11830402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 351
Target Start/End: Complemental strand, 25071607 - 25071520
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    ||||||||| |||||| ||||||||||   || ||||| |||||||||||| ||||| |||| || |||||||||||||||| ||||||    
T  25071607 caccaatttcttcgataataaatttttgagcatattatcaagaacaaccaattttttttatagga-gggtgtatatagaaatttttgtg 25071520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 53077107 - 53077186
Alignment:
Q  264 caccaattt-ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaa 343  Q
    ||||||||| |||||| ||||||||||   || ||||| |||||||||||||||||| |||| | ||||||||||||||||    
T  53077107 caccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttata-ggagggtgtatatagaaa 53077186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 15760813 - 15760736
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||||| ||||||||||   || ||||| |||| ||||||||||||| |||| || |||||||||||||||| ||||||    
T  15760813 ttcgataataaatttttgagcatattatcaagatcaaccaaatttttttatagga-gggtgtatatagaaatttttgtg 15760736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 402
Target Start/End: Original strand, 16877025 - 16877151
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtgaaatacgggtgtatatataga 372  Q
    |||||| |||  ||||||| |||||||||| ||| ||| ||||||||  ||| | ||||||||||||||||| ||||| | ||| ||| ||||||||||     
T  16877025 ttcgataatattttttttggcacattattaggaaaaactaaattttt--atagggagggtgtatatagaaatatttgt-atataagggggtatatatagc 16877121  T
Q  373 aaatcacgccaaaagggtcaaaaacattaa 402  Q
    ||||   | ||||||||||| | |||||||    
T  16877122 aaattgagacaaaagggtcatacacattaa 16877151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 30191027 - 30191081
Alignment:
Q  25 catgatcctgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 79  Q
    ||||||| |||||| || || |||||||  |||||||||||||||||||||||||    
T  30191027 catgatcatgaatgcgtctcgcatgatttagcattatcaaattcaattttgcaat 30191081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 4127664 - 4127624
Alignment:
Q  87 ttttttggaacatttgaaagacaagattaaaattaatttct 127  Q
    ||||||| ||| |||||||||||||||||| ||||||||||    
T  4127664 ttttttgaaacctttgaaagacaagattaagattaatttct 4127624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 11640231 - 11640295
Alignment:
Q  365 tatatagaaaatcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatg 429  Q
    ||||||| ||||||||||||||||| ||| | ||||| || | ||||||| | ||||||||||||    
T  11640231 tatatagcaaatcacgccaaaagggccaatatcattatcaaatttcagcccagcctttcatcatg 11640295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 82 - 319
Target Start/End: Original strand, 2387 - 2624
Alignment:
Q  82 tttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatc 180  Q
    |||| ||||||||||  |||||||||||||||||| ||||||||||  | |||| |||||||||| ||||||||||||| |||| |||||  || |||||    
T  2387 tttatttttttggaaactttgaaagacaagattaagattaatttctataataggttcattttcaactaaaatataatttgtttt-gttatgcaaattatc 2485  T
Q  181 ctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaaaggctcnnnnnnntaccaccaattt-ttcgatg 279  Q
      ||||| || ||||||||||||||||||||||||||||||| | ||  |||| |||||| ||| ||||| ||       || ||||||||| | ||||     
T  2486 tcaatttattgaataataaatatcactaatatttttaatattagtgaaacacattattaggaac-aaagggtccaaaaaatatcaccaatttctacgata 2584  T
Q  280 ataaattttttgacacattattaagaacaaccaaattttt 319  Q
    |||| ||| |||  ||||||||||||||||||||||||||    
T  2585 ataattttcttggtacattattaagaacaaccaaattttt 2624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 18553 - 18722
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| ||||||||||  |||||||||| ||||||| ||||| || |  ||||||||||||||||| ||||||| ||||| |||| ||||| ||| |    
T  18553 ataatttatttttttggaatctttgaaagactagattaagattaagttttctagtaggctcattttcaactaaaataaaatttgtttt-gttataaaaat 18651  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     |||  ||||| ||  |||||||||||||| ||||||||||||||| | |||||||| |||||| ||||||    
T  18652 aatctcaatttattggataataaatatcaccaatatttttaatattagtgaggcacattattaggaacaaa 18722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 1463 - 1294
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagt 176  Q
    |||||||| | ||||||||  |||||||||| ||||||| ||||| || |  ||||||||||||||||| ||||||| ||||| |||| ||||| ||| |    
T  1463 ataatttattattttggaatctttgaaagactagattaagattaagttttctagtaggctcattttcaactaaaatagaatttgtttt-gttatgaaaat 1365  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
     |||  ||||| ||  |||||||||||||| ||||||||||||||| | |||||||| |||||| ||||||    
T  1364 aatctcaatttattggataataaatatcacaaatatttttaatattagtgaggcacattattaggaacaaa 1294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 98304 - 98391
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttatttt 165  Q
    |||||||| ||||||||||  |||||||||||||||||| ||||||||||  || | |||||||||||| ||||||| ||||||||||    
T  98304 ataatttatttttttggaatctttgaaagacaagattaagattaatttctctagcatgctcattttcaactaaaatagaatttatttt 98391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 119420 - 119469
Alignment:
Q  197 taaatatcactaatatttttaatattggcgaggcacaatattagaaacaa 246  Q
    |||||||||| ||||||||||||||| |||||||||| |||||| |||||    
T  119420 taaatatcaccaatatttttaatattagcgaggcacattattaggaacaa 119469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 119516 - 119572
Alignment:
Q  294 acattattaagaacaaccaa-atttttctatatgaagggtgtatatagaaatctttg 349  Q
    |||||||||||||||||||| |||||  |||| | ||| ||||||||||||||||||    
T  119516 acattattaagaacaaccaatattttgttatagggaggatgtatatagaaatctttg 119572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 248
Target Start/End: Complemental strand, 40938 - 40796
Alignment:
Q  102 gaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggt-tataaagttatcctaatttcttcaataataaa 200  Q
    ||||||||||||||| ||||||||     |||| ||||||||||| ||||||||||||| ||||| | | |||| ||||   ||||||||  ||||||||    
T  40938 gaaagacaagattaagattaatttt----gtagcctcattttcaactaaaatataatttgttttgttatgtaaa-ttatttcaatttcttggataataaa 40844  T
Q  201 tatcactaatatttttaatattggcgaggcacaatattagaaacaaaa 248  Q
    |||||| ||||||||||||||| |  ||||||| |||||| |||||||    
T  40843 tatcacaaatatttttaatattagttaggcacattattaggaacaaaa 40796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 40764 - 40693
Alignment:
Q  280 ataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaatctttgtg 351  Q
    |||| ||||||| |||||||||||||| |||||||||||| || | | |||||| ||||| |||| ||||||    
T  40764 ataatttttttggcacattattaagaaaaaccaaatttttttaaagggagggtgcatatataaatttttgtg 40693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 25268 - 25099
Alignment:
Q  78 ataatttaattttttggaacatttgaaagacaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaag-t 176  Q
    |||||||| |||| |||||| |||||||||||||||||  ||||| ||||  | || ||  |||||||| |||||| ||||||  |||| | || ||  |    
T  25268 ataatttatttttatggaacctttgaaagacaagattaggattaacttctctaatatgccaattttcaactaaaatttaatttggtttg-tcatgaatat 25170  T
Q  177 tatcctaatttcttcaataataaatatcactaatatttttaatattggcgaggcacaatattagaaacaaa 247  Q
    ||||  ||||||||  |||||||||||||| ||||||||||||||| | ||| |||| |||||| ||||||    
T  25169 tatctcaatttcttggataataaatatcaccaatatttttaatattagtgagacacattattaggaacaaa 25099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 3287 - 3401
Alignment:
Q  108 caagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttat-aaagttatcctaatttcttcaataataaatatcac 206  Q
    |||||||||  |||||||||  |||||||  |||||||| ||||||||||||| |||| ||||| ||| || ||| ||||| ||  ||||||||||||||    
T  3287 caagattaagtttaatttctctagtaggccaattttcaactaaaatataatttgtttt-gttatgaaaattctcccaattttttagataataaatatcac 3385  T
Q  207 taatatttttaatatt 222  Q
      ||||||||||||||    
T  3386 atatatttttaatatt 3401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 14289 - 14210
Alignment:
Q  375 atcacgccaaaagggtcaaaaacattaacagacttcagcctaacctttcatcatgtcaactttttgggcctttaagtgaa 454  Q
    |||||| |||||||| | |||||||| ||||||||||||  |||| | |||||||||||  ||| |||||||| ||||||    
T  14289 atcacgtcaaaagggccgaaaacattcacagacttcagcacaaccctacatcatgtcaatatttggggcctttcagtgaa 14210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 87782 - 87852
Alignment:
Q  273 ttcgatgataaattttttgacacattattaagaacaaccaaatttttctatatgaagggtgtatatagaaat 344  Q
    |||||| |||||||||  | || |||||||||||||||||| ||||| |||| | |||||||||||||||||    
T  87782 ttcgataataaattttcgggcatattattaagaacaaccaattttttttata-ggagggtgtatatagaaat 87852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 10176 - 10224
Alignment:
Q  26 atgatcctgaatgtgtttcacatgattctgcattatcaaattcaatttt 74  Q
    |||||||| |||| || |||||||||  |||||||||||||||||||||    
T  10176 atgatcctaaatgcgtctcacatgatcttgcattatcaaattcaatttt 10224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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