View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9912_high_11 (Length: 363)
Name: NF9912_high_11
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9912_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 22 - 345
Target Start/End: Original strand, 45541358 - 45541678
Alignment:
| Q |
22 |
atggagagtagtcaaactacaaagtatgttgttaaaaaggaagataaaaaatctaattctcgacatcagtcacatggtagcacaggatcctacgctttta |
121 |
Q |
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| T |
45541358 |
atggagagtagtcaaactacaaagtatgttgttaaaaaggaagataaaaaatctaattctcgacatcagtcacatggtagcacaggatcctacgctttta |
45541457 |
T |
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| Q |
122 |
aaacgtaagcttcaatcacttaccacctttttgtatgtattaattataattgcatgatatgcttagttgagttgccattgagtaaactatttaa-ttann |
220 |
Q |
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| T |
45541458 |
aaacgtaagcttcaatcacttaccacctttttgtatgtattac----aattgcatgatatgcttagttgagttgccattgggcaaactatttaatttttt |
45541553 |
T |
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| Q |
221 |
nnnnngtgttcattattttgaagatcgaaagatggagataaaagtgtctcatccaagggtattggagagaataacacagcaaatatgaaatcagagcaaa |
320 |
Q |
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| T |
45541554 |
tttttgtgttcattattttgaagatcgaaagatggagataaaagtgtctcatccaagggtgttggagagaataacacaccaaatatgaaatcagagcaaa |
45541653 |
T |
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| Q |
321 |
atgaaaaaacagaagaagttgatca |
345 |
Q |
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| T |
45541654 |
atgaaaaaacagaagaagttgatca |
45541678 |
T |
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