View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9912_high_19 (Length: 212)
Name: NF9912_high_19
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9912_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 6578646 - 6578466
Alignment:
| Q |
18 |
caaaggtacgtagcatgcatcgaccatgaaagaaataatacaaataaggatactaaagaagcaaaattaggtgcccgtatttcttcttatcgagacctga |
117 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6578646 |
caaaggtatgtggcatgcatcgaccatgaaagaaataatacaaataaggatactaaagaagcaaaattaggtgcccgtatttcttcttatcgagacctga |
6578547 |
T |
|
| Q |
118 |
atgaatgtaaaatgcagctttgaatttgatacaagctgcgcaaatagttagtataatgataatcaccacataccaccaaac |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6578546 |
atgaatgtaaaatgcagctttgaatttgatacaagctgcgcaaatagttagtataatgataatcaccacataccaccaaac |
6578466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University