View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9912_high_2 (Length: 475)
Name: NF9912_high_2
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9912_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 25928675 - 25928229
Alignment:
| Q |
18 |
tatacaaaattttgctataacttttaatagaccccttgctagtgaggaaaatacttgggtgactttgagatttgggtgattttaatagtgaagggtggaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25928675 |
tatacaaaattttgctataacttttaatagacccattgttagtgaggaaaatacttgggtgactttgagatttgggtgattttaattgtgaagggtggaa |
25928576 |
T |
|
| Q |
118 |
ttgatcctccacaatatttggtcattgagctgatgttgggttttnnnnnnnnnnnnnttatgcttttttatcttaattaaattgtatgtaggtgattgga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25928575 |
ttgatcctccacaatatttggtcattgagctgatgtttggttttcaaaaaaaaaaaattatgcttttttatcttaattaaattgtatgtaggtgattgga |
25928476 |
T |
|
| Q |
218 |
actgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacattaacatatttagggacccaagatggggaagaggac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25928475 |
actgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggac |
25928376 |
T |
|
| Q |
318 |
aagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtgggaaactgattgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
25928375 |
aagaaacagctggtgaagatcctttggtgaattcaaagtatggtgtttcctatgtaagaggacttcaaggagattcctttgaaggtggaaaactgattgg |
25928276 |
T |
|
| Q |
418 |
aggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatg |
464 |
Q |
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| T |
25928275 |
agatcgtcttaaagcttctgcttgttgcaaacattttactgcctatg |
25928229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 207 - 464
Target Start/End: Complemental strand, 25888040 - 25887783
Alignment:
| Q |
207 |
aggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacattaacatatttagggacccaagatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25888040 |
aggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatg |
25887941 |
T |
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| Q |
307 |
gggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtggg |
406 |
Q |
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| T |
25887940 |
gggaagaggacaagaaacagctggtgaagatcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtggg |
25887841 |
T |
|
| Q |
407 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatg |
464 |
Q |
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| T |
25887840 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatg |
25887783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 207 - 464
Target Start/End: Complemental strand, 25910647 - 25910390
Alignment:
| Q |
207 |
aggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacattaacatatttagggacccaagatg |
306 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
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| T |
25910647 |
aggtgattggaactgaggctagaggagtatacaatgctggacaagcccaagggatgaatttttgggcaccaaacataaacatattcagggacccaagatg |
25910548 |
T |
|
| Q |
307 |
gggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtggg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| |||||||||||||||||| |
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| T |
25910547 |
gggaagaggacaagaaacagctggtgaagatcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtggg |
25910448 |
T |
|
| Q |
407 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910447 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatg |
25910390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 207 - 464
Target Start/End: Original strand, 25957135 - 25957392
Alignment:
| Q |
207 |
aggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttgggcaccaaacattaacatatttagggacccaagatg |
306 |
Q |
| |
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||||||||||||| || || || | ||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25957135 |
aggtgattggaaccgaagcaagggcagtgtacaatgctggacaagcagaggggatgacattttgggcaccaaacataaacatatttagggacccaagatg |
25957234 |
T |
|
| Q |
307 |
gggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaagtatgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtggg |
406 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| | | |||||||||||||||| | ||| ||||| |||||||| |||||||||||||||||| |
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| T |
25957235 |
gggaagagggcaagagacagctggtgaagatcctttggtaagtgcaaagtatgctgtttcctttgtgagaggtcttcaaggtgattcctttgaaggtggg |
25957334 |
T |
|
| Q |
407 |
aaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttactgcctatg |
464 |
Q |
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||||| | || || |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25957335 |
aaacttaatgaagatcgtcttaaagcttctgcttgttgtaaacactttactgcctatg |
25957392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 257 - 464
Target Start/End: Complemental strand, 33423731 - 33423527
Alignment:
| Q |
257 |
gggatgacgttttgggcaccaaacattaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttggtgaattcaaagt |
356 |
Q |
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|||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| ||| || | |
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| T |
33423731 |
gggatgacattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaacagctggtgaagatcctatgatgacttctaact |
33423632 |
T |
|
| Q |
357 |
atgctgtttcttatgtaagaggacttcaaggggattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttac |
456 |
Q |
| |
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|||||||||| ||||| |||||||||||||| ||||| ||| |||| || ||| ||| | || | ||| |||||||||||||||||||||| || || |
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| T |
33423631 |
atgctgtttcctatgttagaggacttcaaggtgattcttttcaaggaggtaaattga---ggggacaccttcaagcttctgcttgttgcaaacatttcac |
33423535 |
T |
|
| Q |
457 |
tgcctatg |
464 |
Q |
| |
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|||||||| |
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| T |
33423534 |
tgcctatg |
33423527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 37610214 - 37610288
Alignment:
| Q |
268 |
ttgggcaccaaacattaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatccttt |
342 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | || ||||| ||||| |
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| T |
37610214 |
ttggtcaccaaacattaacatatttagggatccaagatggggaagaggtcaagaaacaccaggagaagacccttt |
37610288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 1370267 - 1370192
Alignment:
| Q |
268 |
ttgggcaccaaacattaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttg |
343 |
Q |
| |
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|||| ||||||||||||||||||| || || |||||||||||||| |||||||||||| | |||||||| |||||| |
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| T |
1370267 |
ttggtcaccaaacattaacatattcagagatccaagatggggaaggggacaagaaacaccaggtgaagaccctttg |
1370192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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