View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9912_high_6 (Length: 401)
Name: NF9912_high_6
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9912_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Original strand, 31668358 - 31668734
Alignment:
| Q |
14 |
caggtgattgtcgaggtgatgcgttcgttatttccaatggagttgattgagtatcggcatagtattgactgtcgattgaacggagaatggcatacagaac |
113 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
31668358 |
caggtgattatcggggtgatgcgttcgttatttccaatggagttgattgagtatcggcatagtattgactgtcgactgaacggagaatggcatacggaac |
31668457 |
T |
|
| Q |
114 |
atgagtttccaatgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatcca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31668458 |
atgagtttccaatgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatcca |
31668557 |
T |
|
| Q |
214 |
aatataacattttagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgcatgaattctgccttgaataaatggcactatctta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31668558 |
aatataacattttagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgcatgaattctgccttgaataaatggcactatctta |
31668657 |
T |
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| Q |
314 |
ccttaattagtatgtatggtattctctctaacaaataaacatatataattcaagcaaaatcgtatataggtacctatg |
391 |
Q |
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| T |
31668658 |
ccttaattagtatgtatggtattctctctaacaaataaacatatataa-tcaagcaaaatcgtatataggtacctatg |
31668734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 115 - 391
Target Start/End: Original strand, 31685390 - 31685666
Alignment:
| Q |
115 |
tgagtttccaatgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatccaa |
214 |
Q |
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| T |
31685390 |
tgagtttccaatgagcttcgcggaaggtatggtgaaatctctcaacgttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatccaa |
31685489 |
T |
|
| Q |
215 |
atataacattttagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgcatgaattctgccttgaataaatggcactatcttac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31685490 |
atataacattttagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgcatgaattctgccttgaataaatggcactatcttac |
31685589 |
T |
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| Q |
315 |
cttaattagtatgtatggtattctctctaacaaataaacatatataattcaagcaaaatcgtatataggtacctatg |
391 |
Q |
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| T |
31685590 |
cttaattagtatgtatggtattctctctaacaaataaacatatataattcaagcaaaattgtatataggtacctatg |
31685666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 32795937 - 32795548
Alignment:
| Q |
14 |
caggtgattgtcgaggtgatgcgttcgttatttccaatggagttgattgagtatcggcatagtattgactgtcgattgaacggagaatggcatacagaac |
113 |
Q |
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||||||||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||| |||| |
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| T |
32795937 |
caggtgattgtcggggtgatgcgttcattattgccaatggagttgatggagtatcggcatagtaatgactgtagactgaacggagaatggcatacggaac |
32795838 |
T |
|
| Q |
114 |
atgagtttccaatgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatcca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32795837 |
atgagtttccaatgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagctgtgctacaagatgagatctgtgcataaatcca |
32795738 |
T |
|
| Q |
214 |
aatat--aacattttagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgca----------tgaattctgccttgaataaat |
301 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
32795737 |
aatataaaacattttagaaaactacagaatgaaagactaatgtttcagataaaacagagcaatgatgcagagccgtaggtgaattctgcctagaataaat |
32795638 |
T |
|
| Q |
302 |
ggcactatcttaccttaattagtatgtatggtattctctctaac-aaataaacatatataattcaagcaaaatcgtatataggtacctatg |
391 |
Q |
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|||||||||||||| |||||||||||| ||| ||||||||| || ||||||||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
32795637 |
ggcactatcttacc-taattagtatgtgtggaattctctctcacaaaataaacagatatgattcaagcaaaatcgtacataggtacctatg |
32795548 |
T |
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