View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9912_high_7 (Length: 395)
Name: NF9912_high_7
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9912_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 43 - 380
Target Start/End: Complemental strand, 40002374 - 40002029
Alignment:
| Q |
43 |
gttttaccacttaaccaaaaagtgacattaactttctaaactttattgtgtgtgaaacttagcttatctagtaatattgatattgttatgttggcatctt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40002374 |
gttttaccacttaaccaaaaagtgacattaactttctaaactttattgtgtgtgaaacttagcttatctagtaatattgatattgttatgttggcatctt |
40002275 |
T |
|
| Q |
143 |
cacctatattattaatttgtgtttttacca--------tccagtgagaaaaactttacttatccattcatgttaattacgtttcagatgcagctttgcgt |
234 |
Q |
| |
|
|||||||||||||| |||||||||||| || || |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
40002274 |
cacctatattattagtttgtgtttttatcagttcatcatcgagtgagaaaaacttcacttatccattcatgttgattacgtttcagatgcagttttgcgc |
40002175 |
T |
|
| Q |
235 |
ccacggtaattagttgatgtaaagaccttcttctagaatccagatcataaccactaacttttaggggtaaaagtctttttgaggaataatgaggttagga |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40002174 |
ccacggtaattagttgatgtaaagaccttcttctagaatccagatcataaccactaactttcaggggtaaaagtctttttgaggaataatgaggttagga |
40002075 |
T |
|
| Q |
335 |
ataaattaaaagcatagttgtttacatgtagacatcacaaatatgt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40002074 |
ataaattaaaagcatagttgtttacatgtagacatcacaaatatgt |
40002029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 40003740 - 40003705
Alignment:
| Q |
12 |
gaacctgtgactttcgagtctaaggattgttgtttt |
47 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40003740 |
gaacctgtgattttcgagtctaaggattgttgtttt |
40003705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University