View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9912_high_8 (Length: 387)
Name: NF9912_high_8
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9912_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 38286702 - 38287069
Alignment:
| Q |
1 |
gaaattgacaagagcatagcataagggaaatgaaaaggaacagagatacatataaaagacccaaagagnnnnnnnngtttaaatttgaagagcttttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
38286702 |
gaaattgacaagagcatagcataagggaaatgaagaggaacaaagatacatataaaagatccaaagagttttttttgtttaaatttgaagagcttttctt |
38286801 |
T |
|
| Q |
101 |
gataatatatacattgtgttaggttcttttacaatgaatacattgaaggacttgttttgtatatttttgagtaatgaaattcctctatgaaaatataatt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38286802 |
gataatatatgcattgtgttaggttcttttacaatgaatacattgaatgacttgttttgtatatttttgagtaatgaaattcctctatgaaaatataatt |
38286901 |
T |
|
| Q |
201 |
attttaaatgatctttagaattaattaatttnnnnnnnnnnnnnnncttacgataacacttttataaaaagggctattaatgacagggtaaaaataaatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38286902 |
attttaaatgatctttagaattaattaattt--taaaaaaaaaaaacttacgatagcacttttataaaaagggctattaacgacagggtaaaaataaatg |
38286999 |
T |
|
| Q |
301 |
actaaagatatcacttatatgaaaagagctattaatacatggtctttaatagcattttaaaagtactatt |
370 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
38287000 |
attaaagatatcacttatatgaaaagagctattaatacagggtctttaatatcattttaaaagtgctatt |
38287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 13055437 - 13055068
Alignment:
| Q |
7 |
gacaagagcatagcataagggaaatgaaaaggaacagagatacatataaaagacccaaagagnnnnnnnngtttaaatttgaagagcttttcttgataat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13055437 |
gacaagagcatagcataagggaaatgaagaggaacagagatacatattaaagacccaaagatctttttttgtttaaatttgaagagcttttcttgataat |
13055338 |
T |
|
| Q |
107 |
atatacattgtgttaggttcttttacaatgaatacattgaaggacttgttttgtatatttttgagtaatgaaattcctctatgaaaatataattatttta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13055337 |
atatacattgtgttaggttcttttacaatgaatacattgaatgacttgttttgtaaatttttgagtaatgaaattcctctatgaaaatatacttatttta |
13055238 |
T |
|
| Q |
207 |
aatgatctttagaattaatta------atttnnnnnnnnnnnnnnncttacgataacacttttataaaaagggctattaatgacagggtaaaaataaatg |
300 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
13055237 |
aatgatctttagaattaattattaattttttttttttaaaaaataacttacgatagcacttttataaaatgggctattaacgacagggtaaaaataaatg |
13055138 |
T |
|
| Q |
301 |
actaaagatatcacttatatgaaaagagctattaatacatggtctttaatagcattttaaaagtactatt |
370 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
13055137 |
actaaagatatcacttttatgaaaagtgctattaatacagggtcttcaatagcattttaaaagtgctatt |
13055068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 14357938 - 14357718
Alignment:
| Q |
7 |
gacaagagcatagcataagggaaatgaaaaggaacagagatacatataaaagacccaaagagnnnnnnnngtttaaatttgaagagcttttcttgataat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14357938 |
gacaagagcatagcataagggaaatgaagaggaacagagatacatatcaaagacccaaagacctttttttgtttaaatttgaagagcttttcttgataat |
14357839 |
T |
|
| Q |
107 |
atatacattgtgttaggttcttttacaatgaatacattgaaggacttgttttgtatatttttgagtaatgaaattcctctatgaaaatataattatttta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14357838 |
atatacattgtgttaggttcttttacaatgaatacattaaatgacttgttttgtatatttttgagtaatgaaattcctctatgaaaatataattatttta |
14357739 |
T |
|
| Q |
207 |
aatgatctttagaattaatta |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14357738 |
aatgatctttagaattaatta |
14357718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 14357685 - 14357562
Alignment:
| Q |
247 |
cttacgataacacttttataaaaagggctattaatgacagggtaaaaataaatgactaaagatatcacttatatgaaaagagctattaatacatggtctt |
346 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
14357685 |
cttacaatagcacttttataaaaagggctattgaccacatggtaaaaataaatgactaaagatatcacttatatgaaaagtgctattaatacagggtctt |
14357586 |
T |
|
| Q |
347 |
taatagcattttaaaagtactatt |
370 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
14357585 |
taatagcattttaaaagtgctatt |
14357562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28160399 - 28160625
Alignment:
| Q |
1 |
gaaattgacaagagcatagcataagggaaatgaaaaggaacagagatacatataaaagacccaaagagnnnnnnnngtttaaatttgaagagcttttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
28160399 |
gaaattgacaagagcatagcataaggaaaatgaagaggaacagagatacatataaaagaaccaaaaagatttttttgtttaaatttgaagagcttttctt |
28160498 |
T |
|
| Q |
101 |
gataatatatacattgtgttaggttcttttacaatgaatacattgaaggacttgttttgtatatttttgagtaatgaaattcctctatgaaaatataatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28160499 |
gataatatatacattgtgttaggttcttttacaatgaatacattgaatgacttgttttgtatatttttgagtaatgaaattcctctatgaaaatataatt |
28160598 |
T |
|
| Q |
201 |
attttaaatgatctttagaattaatta |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
28160599 |
attttaaatgatctttagaattaatta |
28160625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 247 - 370
Target Start/End: Original strand, 28160653 - 28160776
Alignment:
| Q |
247 |
cttacgataacacttttataaaaagggctattaatgacagggtaaaaataaatgactaaagatatcacttatatgaaaagagctattaatacatggtctt |
346 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
28160653 |
cttacgatagcacttttataaaatgggctattaacgacagggtaaaaataaatgactaaagatatcacttttatgaaaagtgctattaatacagggtctt |
28160752 |
T |
|
| Q |
347 |
taatagcattttaaaagtactatt |
370 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
28160753 |
caatagcattttaaaagtgctatt |
28160776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 30543551 - 30543428
Alignment:
| Q |
247 |
cttacgataacacttttataaaaagggctattaatgacagggtaaaaataaatgactaaagatatcacttatatgaaaagagctattaatacatggtctt |
346 |
Q |
| |
|
||||| ||| |||||| |||||||||||||||||||| || | ||||||||||||| | |||| ||||||| | ||||||||||||| ||||||| |
|
|
| T |
30543551 |
cttactatagcactttaataaaaagggctattaatgaagggttcaaaataaatgacttacgatagcacttatttcgaaagagctattaaagactggtctt |
30543452 |
T |
|
| Q |
347 |
taatagcattttaaaagtactatt |
370 |
Q |
| |
|
|||||| |||||||||| ||||| |
|
|
| T |
30543451 |
taatagtgttttaaaagtgctatt |
30543428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University