View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9912_high_9 (Length: 386)
Name: NF9912_high_9
Description: NF9912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9912_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 371
Target Start/End: Original strand, 52599943 - 52600318
Alignment:
| Q |
21 |
agaagcaaggtaatatgataaaacttcataaaaagtttaccacaaaatataaagtaaagtcaaattgtttttataaactttacttaagaattgatggaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52599943 |
agaagcaaggtaatatgataaaacttcataaaaagtttaccacaaaatataaagtaaagtcaaattgtttttataaactttacttaagaattgatggaaa |
52600042 |
T |
|
| Q |
121 |
taaactgaaaacaactta----------aaaaactattttcataagctcttcagacttgcaagcgtttaagcagtggataaaaataaccatggttgtgct |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52600043 |
taaactgaaaacaacttatggacgtttaaaaaactattttcataagctcttcagacttgcaagcgtttaagcagtggataaaaataaccatggttgtgct |
52600142 |
T |
|
| Q |
211 |
tacatatataatattcaaacaagcctaaaaa-------------------actatttaatgcttacatagcaacatatataatttagtttaattttgccc |
291 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52600143 |
tacata----atattcaaacaagcctaaatacaaaatattcaacacctatactatttaatgcttaaatagcaacatatataatttagtttaattttgccc |
52600238 |
T |
|
| Q |
292 |
atggttgcgcggcttataaaaataaccatatttctgttatttgtgcttggcaatttaccagaagaggtgatgaagaggat |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52600239 |
atggttgcgcggcttataaaaataaccatatttctgttatttgtgcttggcaatttaccagaagaggtgatgaagaggat |
52600318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University